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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATTCCAAGTGCTGGGTCAAATCCTGGTGCTGCTGCTGGTGCCGGTGCCGGTGCTGGTGCCCTTGATGCATTGCGACAACTTCCACAGgtattattatatgttggtgtaacttttatacttgttaaaataatgcattgccctaacagctatttacttgtttctgctcag

Basic information

species Oryza sativa
transcript LOC_Os06g15360.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g15360.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G035417_T01 (Zea mays), 5'ss of exon 8
GGCATTCCAAGTGCTGGGTCAAATCCTGGTGCTGCTGCTGGTGCCGGTGCCGGTGCTGGTGCCCTTGATGCATTGCGACAACTTCCACAGgtattattatatgttggtgtaacttttatacttgttaaaataatgcattgccctaacagctatttacttgtttctgctcag
||  ||||||||| |||||| || || |||| || | | ||||| |      |  ||||||| |||||||| |||||||| |||||||||||| || |  |      | | || |  | |   || |  |   || | |   ||||| | ||||||     ||| |     
GGTGTTCCAAGTGGTGGGTCCAACCCAGGTGTTGTTCCAGGTGCAG------GATCTGGTGCTCTTGATGCCTTGCGACAGCTTCCACAGgtagtaattgagcagcttcttacatacaaataagtaatgagcttgtaatttactaactgttatttatcctcttcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29655833|gb|CB652108.1|CB652108
EST:     GTGCCGGTGCCGGTGCTGGTGCCCTTGATGCATTGCGACAACTTCCACAG                         TTCCAAGCGCTGCTTGCATTGGTCCAGGCTAATCCCCAAATCTTGCAG
genomic: GTGCCGGTGCCGGTGCTGGTGCCCTTGATGCATTGCGACAACTTCCACAGgtattattat ... ttctgctcagTTCCAAGCGCTGCTTGCATTGGTCCAGGCTAATCCCCAAATCTTGCAG