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TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaattcttatatatgatcttctacattgacctgacactccaaccttttcctagcttgaatactgttccataatggtggaatcatctattcatttc...
species | Oryza sativa |
transcript | LOC_Os06g13810.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGAGTGTGCTCTGCAAACACATCGTAATGTTGCACTCATTGGAGAAGAG GTTGCGGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACEST: gi|29689204|gb|CB685479.1|CB685479
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACEST: gi|157650204|gb|EX449838.1|EX449838
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACEST: gi|58657805|gb|CK046485.1|CK046485
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAGAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAEST: gi|2800921|gb|AA754215.1|AA754215
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAA-AGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGA
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACEST: gi|33796706|gb|CF324221.1|CF324221
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGACEST: gi|5003496|gb|AU068645.1|AU068645
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
EST: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAG GTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
genomic: TGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaatt ... tgtactgtagGTTGCTGCAAAGAAGGAAACTCTTAAAAGTGTCACCGACTACATTACCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGGCTTATGGGACGTGCTGCTTCTCACATTACATTGGAGTGTGCTCTGCAAACACATCCTAATGTTGCACTCATTGGAGAAGAGgtttgtaattcttatatatgatcttctacattgacctgacactccaaccttttcctagcttgaatactgttccataatggtggaatcatctattcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA