1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACATTAAGAGAGGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGgtcagttatgttaaattctcaacatggtatcaggatttctatttgaattgcactgatagccttactcttgtaatcatccattgtgtaaaattatccaaaacag
species | Oryza sativa |
transcript | LOC_Os06g07200.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTG TCACTGGCGAGCGTGCTGACGAAGAGEST: gi|27548906|gb|CA767571.2|CA767571
genomic: GGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGgtcagttatg ... tccaaaacagTCACTGGCGAGCGTGCTGACGAAGAG
EST: ACCGGGATGTAGTGGAGCGGCGCGTTTTCACTG TCACTGGCGAGCGTGCTGACGAAGAGEST: gi|66922946|gb|CX109794.1|CX109794
genomic: ACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGgtcagttatg ... tccaaaacagTCACTGGCGAGCGTGCTGACGAAGAG
EST: GGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTG TCACTGGCGAGCGTGCTGACGAAGAG
genomic: GGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGgtcagttatg ... tccaaaacagTCACTGGCGAGCGTGCTGACGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATTAAGAGAGGCAATCCAGAAGGAATACCGGGATGTAGTGGAGCGGCGCGTTTTCACTGgtcagttatgttaaattctcaacatggtatcaggatttctatttgaattgcactgatagccttactcttgtaatcatccattgtgtaaaattatccaaaacag
- - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - GTGGAG