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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGGgtatgtgtaaatagttgtacggactttgcttctattctagtccaacctatctgcaattgtcttctaatagctacttatgatctcag

Basic information

species Oryza sativa
transcript LOC_Os06g03760.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G871262_T02 (Zea mays), 5'ss of exon 8
GCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGGgtatgtgtaaatagttgtacggactttgcttctattctagtccaacctatctgcaat-tgtcttctaatagctacttatgatctcag
|| |||||||| ||||| || ||||| ||||| ||||||||||||||| ||||||||| ||| ||||  ||| ||| | || |          | | |||| || || |  | || | |||  ||   |||   |  |  || || |  |||
GCAGAGGCTACTTGGGCATTCACAGTCCTTGGGTACATTGGAAAACTTATATTTGGTGTTGTTGGgtgagtgcaaa-acttttgt--------cctgtattttaatcaagtcaatttccaaagtgatctcttcaaaatg-ttgtgcttgcag

upper sequence: LOC_Os06g03760.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G012284_T01 (Zea mays), 5'ss of exon 6
GCTGAGGCTACCTGGGCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGGgtatgtgtaaa-tagttgtacgg-actttgcttctattctagtccaacctatctgc--aattg-tcttctaatagc-tacttatgatctcag
||||||||||| ||||| || ||||||||||| ||||| || |||||| ||||||||| ||| ||||  ||| |||    |||| | | ||||  ||| | |  || || |   ||  | |  ||||| |||  | | | | |  || || |  |||
GCTGAGGCTACTTGGGCATTCACAGTTCTTGGGTACATCGGGAAACTTCTATTTGGTGTTGTTGGgtgggtgcaaaacctttgtgctgtacttgtcttgtttcttaatcaagtgtactttcccaattgatctgttcaaaacattgttgtgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684950|gb|CK073637.1|CK073637
EST:     GCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGG                         GTTAATTATATCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGAT
genomic: GCTTTGACAGTTCTTGGTTACATTGGAAAACTTTTATTTGGTGCTGTCGGgtatgtgtaa ... atgatctcagGTTAATTATATCGATTGCTTGGGTTGCACATATCGTCATATACTTGTTGAT