1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtctttttaggcttatttaataatcctgtcaacaatgacatttctttagagaagaacttttttattcttatgaatgtcatttttgtttcatgta...
species | Oryza sativa |
transcript | LOC_Os05g51530.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCEST: gi|29656670|gb|CB652945.1|CB652945
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTEST: gi|218479849|gb|FG959490.1|FG959490
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCT
EST: AACCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAAAGAGCEST: gi|88762888|gb|CI772444.1|CI772444
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCEST: gi|33381011|gb|CF196354.1|CF196354
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
EST: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTGGATGCACTNNNGTGCTGTGCGTGTCTTTGTEST: gi|25802832|gb|CA758793.1|CA758793
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGT
EST: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAG GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
genomic: AAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtct ... tattctgcagGTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACAGGAAAGTAGGAAGGAAGAGCTGGAAAAGCTAATGCAAGACCAGGAAGCAATGAGGGCATCACTTCTGCAATGGTGCTATGCCAGCTACAGTGAGgtgcatgtctttttaggcttatttaataatcctgtcaacaatgacatttctttagagaagaacttttttattcttatgaatgtcatttttgtttcatgta
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