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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgctcaaacttcactatattttttgtaccctgcaattgaagtctgaatccaatgggatagttttgaactacaacaattgccatggtgccttttcttt...

Basic information

species Oryza sativa
transcript LOC_Os05g51480.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 8
GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgctcaaacttcactatattttttgtaccctgcaattgaagtctgaatccaatgggatagttttgaactacaacaattgccatggtgccttttcttt--------------------------------
 |||||||||||||||||| |||||||||| || ||  |||| |||| |||||||||||| |||||||||||||||||||| | | |||||   ||    |     |  ||| |    ||| |  | | ||| | |  |  ||    ||  ||  |||  || ||   |||| |||                                
ACTTGAAGAACTTCAAGTACTGGACATCAAATTTCTACATGGTTGTGCTAAACCTACTATTGTTGTCCTCTACCAGgtttgtttacacttcttgatgacctcac--ctttgctagaagagttttgaac-aattgaactgcattttgttatgac--ttgtgatagttgtttttgtttatatgatttgcatcttatgctctacacttcag

upper sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 8
GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgc--tcaaacttcactatattttttgtaccctgcaattgaagtctgaatccaatgggatagttttgaactac-aacaattgccatggtgccttttcttt
|||||| || |||||||| ||||| |||||||| || ||||| |||   ||||| ||||| ||||| |||||||||||   |  |    ||||||  | || | |  |  |    ||||    ||   || ||| || |||     |  |   | ||  ||  ||| |||| ||     
GCTTGAGGAGCTTCAAGTTTTGGATATCAAGTTTCTTTATGGATGTTCAAAACCAACTATTGTTGTTCTCTACCAGgtccccaatttggcttcacatttttatgtccattcactcattgtta-ctatttcaaattggttagcaaccacttgttagcatatgttatgttgccattatc--

upper sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 8
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 5'ss of exon 8
---------------GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgctca--------aacttcactatattttttgtaccctgcaattgaagtctga-------atccaatgggatagttttgaactacaacaattgccatggtgccttttcttt---------------------------------------
               | | ||||| || ||||| |||||||||||||| || |||||||||| |||||||||||| |  || ||||| ||||||    |         |  ||    | ||||| ||   | |||  |  |  |||||       |   | ||      |||| ||  | ||   |||    |     ||    ||                                       
GTCTACGTCGCGCAGGTTGGAAGAGCTGCAAGTTTTGGACATCAAGTTTCTTTATGGCTGTGCTAAACCTACTATTGCAGTTCTCTATCAGgttgatccttgtcacctatttttttcaaattttgtgggtcatgcgttgtacatctgacagatctacatactgcttccttttttaaacataattcttgaagggaaaatttcgactttggtagcactgatggtggttttctgatgtgaccaatcag

upper sequence: LOC_Os05g51480.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ23079 (Selaginella moellendorffii), 5'ss of exon 8
GCTTGAAGAACTTCAAGTATTGGACATCAAGTTCCTGTATGGCTGTGTTAAACCTACTATAGTTGTCCTCTACCAGgtttgctcaaacttcactatattttttgtaccctgcaattgaagtctgaatccaatgggatagttttgaactacaacaattgccatggtgccttttcttt
||| |||||||| |||||  ||||||| |||||||||||||||||    ||||| || || | |||||| ||||||||| | |    ||||| |||  |||| | |     |      | | |       ||  || ||                                     
GCTGGAAGAACTGCAAGTGCTGGACATAAAGTTCCTGTATGGCTGCTCGAAACCAACAATTGCTGTCCTTTACCAGgttcggtttc-cttcaatatccttttaggaaaaaacttggcgaatgtttgcttcatttgacag-------------------------------------