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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAACATTGAAAATTTGGTTGATCATTTCCATGAACGTGGTCTTTACCGTTCAATATTTCTCAGgtaacagtgtaactgtacttttgatatggaagtgttgcttctactttccttaattcttaattagaactatacaaaactcaggaacttatgaaatgccttttcag

Basic information

species Oryza sativa
transcript LOC_Os05g50170.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g50170.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G437845_T01 (Zea mays), 5'ss of exon 8
ATACAACATTGAAAATTTGGTTGATCATTTCCATGAACGTGGTCTTTACCGTTCAATATTTCTCAGgtaa-cagtgtaactgtacttttgatatggaagtgttgcttctact-ttccttaattcttaattagaactatacaaaactcaggaacttatgaaatgccttttcag
|||||| ||  |||||||||| ||||| || ||| |  ||||||||||  ||||||||||||||||||||  | | |   | |||||||  | |||| |||||  || | |  ||   ||| |  | | || || || |    |  || ||  | |                
ATACAATATCCAAAATTTGGTCGATCACTTTCATCAGTGTGGTCTTTATTGTTCAATATTTCTCAGgtaaataatatggatttactttt--tgtggaggtgttctttttgcaattgaataagtgctgacta-aattaca----agccacgatttcag---------------

upper sequence: LOC_Os05g50170.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G406177_T01 (Zea mays), 5'ss of exon 7
ATACAACATTGAAAATTTGGTTGATCATTTCCATGAACGTGGTCTTTACCGTTCAATATTTCTCAGgtaa-cagtgtaactgtacttttgatatggaagtgttgcttctact-ttccttaattcttaattagaactatacaaaactcaggaacttatgaaatgccttttcag
|||||| ||  |||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||  | |||   | |||||||  | || | |||||  || | |  ||   ||| |  | | || || || |    |  || ||  | |                
ATACAATATCCAAAATTTGGTCGATCACTTTCATGAGCGTGGTCTTTATCGTTCAATATTTCTCAGgtaaataatgtggatttactttt--tgtgaaggtgttctttttgcaattgagtaagtgctgacta-aattaca----agccacgatttcag---------------

upper sequence: LOC_Os05g50170.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G325504_T01 (Zea mays), 5'ss of exon 4
ATACAACATTGAAAATTTGGTTGATCATTTCCATGAACGTGGT--CTTTACCGTTCAATATTTCTCAGgtaa-cagtgtaactgtacttttgatatggaagtgttgcttctactttcct-taattcttaattaga--actatacaaaactcaggaacttatgaaatgccttttcag
|||||| ||  |||||||||| ||||| || ||||| ||||||  |||||  ||||||||||||||||||||  | |||   | |||||||  | |||| |||||  || | |  ||   ||| |  | | || |  || |  ||  | |   | | | ||| |  |         
ATACAATATCCAAAATTTGGTCGATCACTTTCATGAGCGTGGTGTCTTTATAGTTCAATATTTCTCAGgtaaataatgtggatttactttt--tgtggaggtgttctttttgcaatcgaataagtgctgactaaattacaagccacgatttcagca-taatggagggagag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66926863|gb|CX113711.1|CX113711
EST:     TTGGTTGATCATTTCCATGAACGTGGTCTTTACCGTTCAATATTTCTCAG                         CATAATGGAGGGAAAGAAATCATTGCCACATTTCTCTCCAGAAACTGTTGC
genomic: TTGGTTGATCATTTCCATGAACGTGGTCTTTACCGTTCAATATTTCTCAGgtaacagtgt ... gccttttcagCATAATGGAGGGAAAGAAATCATTGCCACATTTCTCTCCAGAAACTGTTGC