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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtatgtttcacttcagagaatttacagatgtttctacaagtatcctacttaacacaattatactacgaacag

Basic information

species Oryza sativa
transcript LOC_Os05g47545.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g47545.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G170400_T03 (Zea mays), 5'ss of exon 6
GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtatgtttcacttcagagaatttacagatgtttctacaagta--tcctacttaa---cacaattatactacg-aacag-----------------------
||| || ||||| || ||||| ||||||||||||||||||   ||| ||  |||||  ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||  | | | |  |    | |   |  |||||  | |||||||    |||| |||||  | | || ||                       
GTGCTCTGTTGAATTCGAAGTTGCTGATTGCACCACAAAGGATTACCCAGAAAATAGTTTTGACGTCATCTACAGCCGTGACACCATCCTTCACATACAAgtatgtttcactctata-attcaatccttttccgtgtaagtagttactacttatttccacagttatatcatggaatagaagaaatgcatcttcaggtgaaa

upper sequence: LOC_Os05g47545.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT3G18000.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtat---gtttcacttcagagaatttacagatgtttctacaagtatcctacttaacacaat-tatactacgaacag
 || |||||||||||||| || |||||||||||||||||   |||| ||   ||| | |||||||| || |||||||||||||| ||||| ||||| || |||       | |  ||| ||   |  |       | || || | |      | || || | | |  |     |||
CTGCTCGGTTGAGTTTGAGGTTGCTGATTGCACCACAAAACACTACCCAGATAATTCGTTTGATGTCATTTACAGCCGTGACACTATTCTGCACATCCAAgtactcaacatgatctcatagttctctcttggaagtttataattgtgaatgcttactcattctctcttttcttcag

upper sequence: LOC_Os05g47545.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv17s0000g02430.t01 (Vitis vinifera), 5'ss of exon 8
GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtatgtttcacttcagagaatttacagatgtttctacaagtatcctact--taacacaattatactacgaacag--------------------------
||| || ||||| || || |||||||| |||||||  ||  | ||  |    || ||||||||||||||||||||||||||||||||||||||||| || |||   | |  |||       |    ||  |||  |    ||| |  ||  |||    ||||| || |    |                           
GTGCTCAGTTGAATTCGAGGTAGCTGACTGCACCAAGAAATCATATCCTGACAACACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATTCAAgtaatatacctttcttttttctgtgggacttttgaatggttatgcatctgttaattttattattctgcctttatattctagttccatttggttcgaaaag

upper sequence: LOC_Os05g47545.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv01s0011g05200.t01 (Vitis vinifera), 5'ss of exon 8
GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtatgtttcacttcagagaatttacagatgtttctacaagtatcctacttaacac--aattatactacgaacag------------------------------------------------------------------------------------------------------
 ||   ||| || || || || |||||||||||||  || || ||  |    ||||||||||||||||||||||||||||| ||||||||||||||||| |||   |    |||| |   ||| |||  |||||   ||  ||  ||   ||| |  ||  ||  |  |||                                                                                                         
ATGCCTGGTCGAATTCGAGGTTGCTGATTGCACCAAGAAAACGTATCCTGATAATACATTTGATGTGATCTACAGCCGTGATACCATTCTTCACATACAGgtag--tcattttcacatcctttgcagcggtttcatgaatcatgataaacaactctgaaggatcttttgaatctccgaccatgcacatccaacatagccgaaattttttattattaattatggtttttccttttcttcatataccgccatctgatggtagctgtggaattttttag

upper sequence: LOC_Os05g47545.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv01s0011g05220.t01 (Vitis vinifera), 5'ss of exon 7
GTGTTCGGTTGAGTTTGAAGTAGCTGATTGCACCACAAAGACCTACGCACCAAATACATTTGATGTGATCTACAGCCGTGACACCATTCTTCACATACATgtatgtttcacttcagagaattta--cagatgtttctacaagtatcctacttaacacaattatactacgaacag-----------------------------
  | | |||||| ||||| || || ||||||||||  || || ||  |    | ||||||||||||||||||||| |||||||| |||||||||||||| |||    ||| | |      ||||  |  || |  | |  |      | ||    |||| ||||    |    |                             
TCGCTTGGTTGAATTTGAGGTTGCAGATTGCACCAAGAAAACATATCCTGATAGTACATTTGATGTGATCTACAGTCGTGACACTATTCTTCACATACAAgtaa---tcattcctatttctttatccgaatttcacgattaaggctgttctgtgaacaactataaagggtcttgttaattttgtgcacattctgttcttttct