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TGAATTGCCAGAGTTTTTTGGTGGAAAATGCAAGTGCGAGGCATTTGGAGGTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatcttgaaaccaaatcaccagtccaccgcttactgaaaggaaaatagaaagagggagaaaaataatagatgcttgctggtgtattattacatgcacactatctttgcgttggtgttgatatatctaacatgatggattttgaatttggcttgtccag
species | Oryza sativa |
transcript | LOC_Os05g46720.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAG AGGGTCCTGAATGGCGAAGCAAATTATGGGAGGGCAA-TTGTGACCATATCEST: gi|29628535|gb|CB633546.1|CB633546
genomic: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatctt ... gcttgtccagAGGGTCCTGAATGGCGAAGCAAATTATGGGAGG-CAAATTGTGACCATATC
EST: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAG AGGGTCCTGAATGGCGAAGCAAATTATGGGAGGCAAATTGTGACCATATCAEST: gi|2443121|gb|C74892.1|C74892
genomic: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatctt ... gcttgtccagAGGGTCCTGAATGGCGAAGCAAATTATGGGAGGCAAATTGTGACCATATCA
EST: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAG AGGGTCCTGAATGGCGAA-CAAATTATGGGAGGCAAATTGTGACCATATCAEST: gi|3766939|gb|AU031049.1|AU031049
genomic: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatctt ... gcttgtccagAGGGTCCTGAATGGCGAAGCAAATTATGGGAGGCAAATTGTGACCATATCA
EST: GTTNCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAG AGGGTCCTGAATGGCGAA-CAAATTATGGGANGCAAATTGTGACCATATCA
genomic: GTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatctt ... gcttgtccagAGGGTCCTGAATGGCGAAGCAAATTATGGGAGGCAAATTGTGACCATATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATTGCCAGAGTTTTTTGGTGGAAAATGCAAGTGCGAGGCATTTGGAGGTTGCAAAAAATCAGATAAAGGTCCTTGGAAGGATCCTAACATAATAAAGgttatatcttgaaaccaaatcaccagtccaccgcttactgaaaggaaaatagaaagagggagaaaaataatagatgcttgctggtgtattattacatgcacactatctttgcgttggtgttgatatatctaacatgatggattttgaatttggcttgtccag
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