1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactcctatttctgccacataacaacaggaggaatttgactgccacgagtattattctactttcaattaatacgaatattttcttacag
species | Oryza sativa |
transcript | LOC_Os05g46580.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAA GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|58685683|gb|CK074370.1|CK074370
genomic: TGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAG GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|58685871|gb|CK074558.1|CK074558
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAG GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|58678948|gb|CK067635.1|CK067635
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAG GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|88247621|gb|CI247470.1|CI247470
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: TATACTTTCAAGTCCAA GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|163928447|gb|EG711347.1|EG711347
genomic: TATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAA GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|58603777|gb|CK014305.1|CK014305
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTCACGATGGGAATATACTTTCAAGTCCAG GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGEST: gi|88968869|gb|CI098954.1|CI098954
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGG
EST: CTTTCAAGTCCAA GACGATGATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAGEST: gi|58674478|gb|CK063165.1|CK063165
genomic: CTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
EST: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAG GACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
genomic: GTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactccta ... tttcttacagGACGATTATCTAGATTGTTATGGTGACCCCAAATTTATTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTTGTGCACTGTTGCTATCTGGAGAGGACTTGACCAAATATGGTGCTGTAGAAGACATTCTTGTTAAGATGGGAATATACTTTCAAGTCCAAgtaactcctatttctgccacataacaacaggaggaatttgactgccacgagtattattctactttcaattaatacgaatattttcttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG