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GGACCAGATGCTTAGGTTGCTTCACGCATGTGGGATGCCAGCAGAGGATGTGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGgtttgaatagctaccctctcactcactgtaaagtaaagagattacatgctgtatcagatagcataacaaattagcacacattatcactaacaccaccttt...
species | Oryza sativa |
transcript | LOC_Os05g45960.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAG GCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAAEST: gi|44673793|gb|CR287227.1|CR287227
genomic: TGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGgtttgaatag ... tctcttttagGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAA
EST: TGGACTTCATAAATTCTGATGGTACCACGATGAACAAGCTGCTGTTAGAG GCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAAEST: gi|58676256|gb|CK064943.1|CK064943
genomic: TGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGgtttgaatag ... tctcttttagGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAA
EST: TGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAG GCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAA
genomic: TGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGgtttgaatag ... tctcttttagGCAAATCCGAAAATGACCCTCTTCACTGGGAGCTCACGGATAGCAGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACCAGATGCTTAGGTTGCTTCACGCATGTGGGATGCCAGCAGAGGATGTGGACTTCATAAATTCTGATGGTATCACGATGAACAAGCTGCTGTTAGAGgtttgaatagctaccctctcactcactgtaaagtaaagagattacatgctgtatcagatagcataacaaattagcacacattatcactaacaccaccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc