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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACACACAAAATAAATAAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtacgtccatagctctagctcattgagcatataattatagccttgcacttattctcctagttatatatttcttttttcaatttttatctttgtaccctcatgtcctaacaaatttcatgaacgtcag

Basic information

species Oryza sativa
transcript LOC_Os05g41120.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41120.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G044457_T01 (Zea mays), 5'ss of exon 8
ATCACACACAAAATAAATAAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtacgtccatagctctagctcattgagcatataattatagccttgcacttattctcctagttatatatttcttttttcaatttttatctttgtaccctcatgtcctaacaaatttcatgaacgtcag
|| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||  |  |||  | |  |||| |||||||| ||||        || || ||| |  |  | |   | | || ||  ||     ||  | ||||   || |   |||| | |               
ATTACCCACAAAATAAACAAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTCAATCCACTTGATGGgtaactatatatgtttcactcagtgagcataaaatt--------gcgctaattgtttt--tcaggcactcctattaaca-----taaatatgtattttcttactctaaaacacacag----------

upper sequence: LOC_Os05g41120.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G161019_T01 (Zea mays), 5'ss of exon 8
ATCACACACAAAATAAATAAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtacgtccatagctctagctcattgagcatataattatagccttgcacttattctcctagttatatatttcttttttcaatttttatctttgtaccctcatgtcctaacaaatttcatgaacgtcag
|| |  ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  |   ||  | |   ||| |||||||| |||  |  ||        ||| |  |||  | |   |  |    | ||| | ||| ||  ||| || |   |    ||   || ||||||  |||
ATTAGCCACAAAATAAACAAACTGTCCTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtaactatctatgtttcattcagtgagcataaaatggtgccc--------attgttttaggcacac-ctattaacctaaatatgtattttcttactct-aaaccacttcaccatttatgaaca-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642620|gb|CB647627.1|CB647627
EST:     AAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGG                         TGCTCAGTGGACACAACCAGCATCAGATGGGACATACCAATACTTCATAAA
genomic: AAACTGTCTTTTGGGACAGAATTCCCTGGTGTTGTTAATCCACTTGATGGgtacgtccat ... tgaacgtcagTGCTCAGTGGACACAACCAGCATCAGATGGGACATACCAATACTTCATAAA