1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCCAGAAATCTGGAATGGTGGTGTTGGGTTTGTGTCAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtcacattgtgatgtcttctgtggtagcgtgccttctggaacttggaaccgacaattgctaagagaatagttgaagtgtattccatctaccaagcaggacatctgtgtgacaatgtatggttgctcctttcag
species | Oryza sativa |
transcript | LOC_Os05g40990.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTGEST: gi|11233451|gb|AU164863.1|AU164863
genomic: CCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTGEST: gi|88852330|gb|CI374098.1|CI374098
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTGEST: gi|86537997|gb|CI178203.1|CI178203
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCGAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTGEST: gi|86420858|gb|CI056847.1|CI056847
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCCAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACGAAGCCATGGCTGAACACCTGEST: gi|29662070|gb|CB658345.1|CB658345
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTGEST: gi|3767986|gb|AU032013.1|AU032013
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
EST: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAG ATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
genomic: CAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtca ... ctcctttcagATATTGAGATGCGGACCTCCTCCCATGAACAAAGCCATGGCTGAACACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCAGAAATCTGGAATGGTGGTGTTGGGTTTGTGTCAATGGAAATGATCCAAACCCATTGCCCGGCACCTGCTGCTGACATTCAGgtaggtgtcacattgtgatgtcttctgtggtagcgtgccttctggaacttggaaccgacaattgctaagagaatagttgaagtgtattccatctaccaagcaggacatctgtgtgacaatgtatggttgctcctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT