Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTgtaagaattcaagctatttatgtttaataactttgatgtattgtcaagtcaatatctaatgcatctgtcatttttacag

Basic information

species Oryza sativa
transcript LOC_Os05g37120.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G106140_T01 (Zea mays), 5'ss of exon 8
ATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTgtaagaattcaagctatttatgtttaat--aactttgatgtat-tgtcaagtcaatatctaatgcatctgtcatttttacag
||| |||||| | ||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |  ||  ||||||||||| | |  |||  |  | ||| |||  || || | | ||||||||   ||  || |||||
ATACCGCTTACTAAGTCGACCCTACGCATTTGGTTGTGTTCTAAGGCTGAGAACATCTTCAGATTTTGAACCAGGCAATTCTgtaagtagacattctatttatgttcactttaaccctactatatatgtgtagccagtttgtaatgcattcatc-cttctacag

upper sequence: LOC_Os05g37120.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G141735_T01 (Zea mays), 5'ss of exon 8
ATATCGCTTATTGAGTAGACCCTATGCATTTGGTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTgtaagaattcaagctatttatgtttaat--aactttgatgtat-tgtcaagtcaatatctaatgcatctgtcatttttacag
||| || ||  | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||| | | || ||||| ||||| | |  ||   |  | ||| |||  || || | | ||||||||   ||  || |||||
ATACCGATTGCTAAGTCGACCCTATGCATTTGGTTGTGTTCTAAGGCTGAGAACATCTTCAGATTTTGAGCCGGGCAATTCTgtaagtagttaatctattcatgttcactttaatcctagtatatatgtatagccagtttgtaatgcattcatc-cttctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674495|gb|CB670770.1|CB670770
EST:     GTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCT                         TATGGCCATTTCTTCCCTGATCCTCAATATGAACATGTGCAACATATCATC
genomic: GTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTgtaagaattc ... atttttacagTATGGCCATTTCTTCCCTGATCCTCAATATGAACATGTGCAACATATCATC
EST: gi|29616493|gb|CB621505.1|CB621505
EST:     GTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCT                         TATGGCCATTTCTTCCCTGATCCTCAATATGAACATGTGCAACATATCATC
genomic: GTTGTGTTCTAAGGTTGAGAACATCTTCAGATTTTGAACCTGGCAATTCTgtaagaattc ... atttttacagTATGGCCATTTCTTCCCTGATCCTCAATATGAACATGTGCAACATATCATC