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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACTgtatgttctcattacgcttctttaccagctaagcatttaaacaagactaacattgtatacaacttgccacaacctttattcattgaattactatagtttg...

Basic information

species Oryza sativa
transcript LOC_Os05g35730.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35730.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G011169_T01 (Zea mays), 5'ss of exon 8
GTGACCAACAGATTTATTCAGCGCAAGCTTGTGCAACGATGTTATGACAAAGCTCTTGCAATTGGTCTGAAAGGATATGCAAAACTgtatgttctcattacgcttctttaccagctaagcatttaaacaagactaacattgtatacaacttgccacaacctt-tattcattgaattactatagtttg-
||||||| || |||||||   |||||||||||||| ||||||||||||| ||| ||||| |||||||| ||||||||||| ||||||||||| ||  ||| ||  |||| |||   || | | | |||   ||    ||| | | |  ||  | |     |  || | ||||||  | |         
GTGACCAGCAAATTTATTTCACGCAAGCTTGTGCAGCGATGTTATGACAGAGCCCTTGCGATTGGTCTAAAAGGATATGCGAAACTgtatgtgcttgttaagcc-ctttcccatacaatcttgtgaaccttacctttatttttt-ctgctaactaatgtttagtaattattgaagaagtccttgccac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180189|gb|CI044468.1|CI044468
EST:     TGGTCTGAAAGGATATGCAAAACT                         ACACCAACCCGTCTTGGCAAGACTTGCTAACTGGGAAGATATTAGAAAG
genomic: TGGTCTGAAAGGATATGCAAAACTgtatgttctc ... gtttttgcagACACCAACCCGTCTTGGCAAGACTTGCTAACTGGGAAGATATTAGAAAG