1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaaattctgtttcttcctcactttctaatccttgttggacaatttttctgttcttatgttgccgtccttcttttgtttacctgcttctataacccatcatttctttctgctag
species | Oryza sativa |
transcript | LOC_Os05g29860.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG GTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTEST: gi|66915672|gb|CX102520.1|CX102520
genomic: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaa ... tttctgctagGTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
EST: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG GTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTEST: gi|33683403|gb|CF311642.1|CF311642
genomic: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaa ... tttctgctagGTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
EST: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG GTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTEST: gi|88974714|gb|CI023010.1|CI023010
genomic: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaa ... tttctgctagGTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
EST: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG GTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGTEST: gi|88956821|gb|CI009049.1|CI009049
genomic: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaa ... tttctgctagGTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
EST: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTG GTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
genomic: CAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaa ... tttctgctagGTGCCATTACTGGGGCTATAACAACACCACTCGATGTGATGAAGACGCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAAGAGGGAGCTGAATGATCCAGAGAATGCACTTATTGGTGCTTTTGCTGgtaggactaaattctgtttcttcctcactttctaatccttgttggacaatttttctgttcttatgttgccgtccttcttttgtttacctgcttctataacccatcatttctttctgctag
- AAGAGG
- - - - GGAGCT
- - - - - AGCTGA