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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaatccgtttttgtctccctatgttcaatgcaaactatttaattataacaacttaactccttattttcactttaag

Basic information

species Oryza sativa
transcript LOC_Os05g29050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 8
AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaatccgtttttgtct-----ccctatgttcaatgcaaactatttaattataacaacttaactcc-ttattttcactttaag---------------
|||| |||||||| ||||||||||| | |||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||| ||||||||   ||   || ||  ||     |  | |||| |||  ||| | |||  ||||   |  | | ||   || |||| ||||| |                
AAATTAACAGCTTATACAGTAAACAGAGGCTACTTAACATTCATGAAAATGTTAAAGTTCTGCGTTACCCTGATCACTTCTCAAGTGGTGTATACTTGTGgtatgattgattttttgttccctgtttcctttttgttaaataaaaagtttttt-ttattttatttgatctgaattttttttacttttattgttttgcctttaag

upper sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 9
AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacg--------aatccgtttttgtctcccta---tgtt-caatgcaaact---atttaattataacaacttaactccttattttcactttaag------------------------------------------------------------------
| ||||||||  | || || ||||  | ||| |||  |||||||||||||||    || || || |||||||||||||||||||| ||||| ||| | ||||||||          | | |   | | || | |||   |||  ||||||    |    ||||  | |   |  || |      ||   |  || ||                                                                   
AGATCAACAGTGTATATAGCAAACGCAGGCTTCTTGGCATTCATGAGAATGTGCGGGTACTTCGTTATCCTGATCATTTCTCAAGTGGTGTCTACCTCTGgtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctag

upper sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 9
AAATCAACAGCTTGTACAGTAAACAAAAGCTACTTAACATTCATGAGAATGTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaatccgtttttgtctccctatgttcaatgcaaactatttaattataacaacttaactccttattttcactttaag-----------------------------
||||||||||  | |||||||||   ||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||||||  || || ||  | |||||||   |||    |||    ||| |||     ||| ||   ||| |  ||||  |  |    |  | ||      || |||                             
AAATCAACAGTGTCTACAGTAAAAGGAAGCTTCTTAGCATTCATGAGAATGTGAGAGTACTGCGATATCCTGATCATTTCTCAACTGGCGTTTATCTGTGgtatgt--aatttactttgaagtcc-tata---gatgtaaga-attgagctatagtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgtttatatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692366|gb|CK081053.1|CK081053
EST:     GTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATG                         GTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGG
genomic: GTAAAAGTTCTGCGATATCCTGATCATTTCTCAAGCGGTGTATACTTATGgtatgacgaa ... tcactttaagGTCACACCATGAGAAAATTGTGATAGTAGATAATCAAGTATGCTATCTTGG