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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTCCACGGAAACTCCTTTGAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatactctttttgtggcatgaactcttgaaggttgacaatgtcaaggctgataactaatttatgaaaaactcaaatgagcag

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627199|gb|CB632210.1|CB632210
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29680539|gb|CB676814.1|CB676814
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29627859|gb|CB632870.1|CB632870
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29622647|gb|CB627658.1|CB627658
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29624375|gb|CB629386.1|CB629386
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29628146|gb|CB633157.1|CB633157
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
EST: gi|29664573|gb|CB660848.1|CB660848
EST:     GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATT                         ATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA
genomic: GAAGGACCAGTCCCAGAAAGTCTGTCTAATCTGACCAAATTAACAAGATTgtaagtatac ... aaatgagcagATGGATTGGAGATATTATAAATGGGGTCTCTCCGTTGGCATTTATCAGTAA