1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatgaacacattacacggcattgtccacttttaccacag
species | Oryza sativa |
transcript | LOC_Os05g09500.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCRAAATCTGTGACEST: gi|86431683|gb|CI085294.1|CI085294
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|86259927|gb|CI065800.1|CI065800
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: CTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|33681408|gb|CF309647.1|CF309647
genomic: CTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: AACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAANCCTGAAG ATCACAGACACNATCCTTAGAAACAAGGAAGATGGGTTGTCGAAATCTGTEST: gi|86260212|gb|CI066085.1|CI066085
genomic: AACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAA-CCTGAAGgtaatcttca ... tttaccacagATCACAGACAC-ATCCTTAGAAACAAGGAAGATGG-TTGTCGAAATCTGT
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|29633966|gb|CB638975.1|CB638975
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|29633165|gb|CB638174.1|CB638174
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|88968348|gb|CI098590.1|CI098590
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|86823464|gb|CI256416.1|CI256416
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|29669106|gb|CB665381.1|CB665381
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|29672558|gb|CB668833.1|CB668833
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|86493880|gb|CI136513.1|CI136513
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGACEST: gi|29674951|gb|CB671226.1|CB671226
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
EST: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAG ATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
genomic: GAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttca ... tttaccacagATCACAGACACATCCTTAGAAACAAGGAAGATGGTTGTCGAAATCTGTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTCCTGATATTTCCGTGATGCATCATGATGGAACACCTGATCTCAGAATTGTGGCTGAAAAACTTGCAGATAACCTGAAGgtaatcttcatcagtaaatccagcattgaactgtattccctctatccattttatgcacaatgaacacattacacggcattgtccacttttaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG