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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttctatttaagaggataaccaaaagagttgcattagattttgcattagattcgtatcttacatatatttttgacacag

Basic information

species Oryza sativa
transcript LOC_Os05g03480.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03480.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G052630_T03 (Zea mays), 5'ss of exon 5
-------------------------------------------------GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgtt--ttctatttaagaggataaccaaaagagttgcattagattttgcattagattcgtatcttacatatatttttgacacag
                                                 |||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||| |  ||||| ||     | | |  |||    |   |  | ||  || | | |   |  || | || |  || |      |||
TCTACAGCTTTCTGGTCATGTTACTGATGGTCCTTGTTCACGACTACAGGTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatgatgtttctactt-----gctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaac-tccatctaatctgcag

upper sequence: LOC_Os05g03480.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G381051_T01 (Zea mays), 5'ss of exon 7
GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgtt--ttctatttaag-aggataaccaaaagagt--tgcattagattttgcattagattcgtatcttacatatatttttgacacag
|||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |  ||||| ||    |||||||  | |  ||   || | |          |||  | |  |||| |  |  |            
GTTCAGTACTGCTCAGAAGTTGGACAAACTTGGCATGAGAGGAAGCGACACgtatggtgtttctacttgttcaggataattatacaagcggtgaactcaggcccaatttaactcc--atctaatctgcag-----------

upper sequence: LOC_Os05g03480.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G052630_T02 (Zea mays), 5'ss of exon 7
GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgtt--ttctatttaagaggataaccaaaagagttgcattagattttgcattagattcgtatcttacatatatttttgacacag
|||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||| |  ||||| ||     | | |  |||    |   |  | ||  || | | |   |  || | || |  || |      |||
GTTCAGTACTGCTCAGAAATTGGACAAACTTGGCATGAGAGGAAGCGACACgtatgatgtttctactt-----gctcatgaaacttatgaaaagaaatggtgaaatcggggccaatttaac-tccatctaatctgcag

upper sequence: LOC_Os05g03480.4 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 5'ss of exon 9
GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttctatttaagaggataaccaaaagagttgcattagattttgcattagattcgtatcttacatatatttttgacacag------
 ||||||||||| ||||| || ||||| ||||| ||| |||||||||||||||| |  |  |   ||  || ||   |       || |  |   || || |   |    | || | | |  | |  || ||| |       
ATTCAGTACTGCTCAGAAATTAGACAAACTTGGGATGCGAGGAAGTGACACgtaagcctcattactac-agcatgctcccccttttttctctcttttctgaaactggagaggatatgataattttcattaacaaaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29661230|gb|CB657505.1|CB657505
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29680250|gb|CB676525.1|CB676525
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29664861|gb|CB661136.1|CB661136
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATNGAAA-CGTTCTCG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCAT-GAAAACGTTCTCG
EST: gi|58595349|gb|CF993657.1|CF993657
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29672430|gb|CB668705.1|CB668705
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29642660|gb|CB647667.1|CB647667
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTG
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGANAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29668356|gb|CB664631.1|CB664631
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29674357|gb|CB670632.1|CB670632
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29662792|gb|CB659067.1|CB659067
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29644599|gb|CB649606.1|CB649606
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATG
EST: gi|29643546|gb|CB648553.1|CB648553
EST:     GCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCAAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: GCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29637531|gb|CB642540.1|CB642540
EST:     ACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: ACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29673823|gb|CB670098.1|CB670098
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|58588211|gb|CF986519.1|CF986519
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCANTGAAA-CGTT
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCA-TGAAAACGTT
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29663217|gb|CB659492.1|CB659492
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29659705|gb|CB655980.1|CB655980
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29657681|gb|CB653956.1|CB653956
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29669234|gb|CB665509.1|CB665509
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29670747|gb|CB667022.1|CB667022
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCA
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCA
EST: gi|29672136|gb|CB668411.1|CB668411
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACG
EST: gi|29675357|gb|CB671632.1|CB671632
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29683358|gb|CB679633.1|CB679633
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29664111|gb|CB660386.1|CB660386
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCC
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCC
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29672648|gb|CB668923.1|CB668923
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29667481|gb|CB663756.1|CB663756
EST:     GCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: GCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGT
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGT
EST: gi|58594804|gb|CF993112.1|CF993112
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCGGGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29642661|gb|CB647668.1|CB647668
EST:     TCAGTACTGCACAGAAGTTGGAC-AGCTTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TCAGTACTGCACAGAAGTTGGACAAGC-TTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29642659|gb|CB647666.1|CB647666
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29680932|gb|CB677207.1|CB677207
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29664257|gb|CB660532.1|CB660532
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|33683926|gb|CF312165.1|CF312165
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29642658|gb|CB647665.1|CB647665
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTG
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|428577|gb|D24729.1|D24729
EST:     GAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: GAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29665695|gb|CB661970.1|CB661970
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661040|gb|CB657315.1|CB657315
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29679285|gb|CB675560.1|CB675560
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTC
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTC
EST: gi|29664204|gb|CB660479.1|CB660479
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29663798|gb|CB660073.1|CB660073
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|84117533|gb|CD151300.1|CD151300
EST:     ACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: ACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29637680|gb|CB642689.1|CB642689
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29671621|gb|CB667896.1|CB667896
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|218479296|gb|FG957919.1|FG957919
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29678948|gb|CB675223.1|CB675223
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29669119|gb|CB665394.1|CB665394
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661172|gb|CB657447.1|CB657447
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29680495|gb|CB676770.1|CB676770
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCA
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCA
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTTGTTT-GTGCCCCATGAAAACGTTCTCG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATT-GTTTTGTGCCCCATGAAAACGTTCTCG
EST: gi|29668395|gb|CB664670.1|CB664670
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTG
EST: gi|29658318|gb|CB654593.1|CB654593
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29665694|gb|CB661969.1|CB661969
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCCATGAAA-CGTTCTCG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCC-ATGAAAACGTTCTCG
EST: gi|29668355|gb|CB664630.1|CB664630
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGANAACGTTCT
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCT
EST: gi|33683556|gb|CF311795.1|CF311795
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
EST: gi|29661525|gb|CB657800.1|CB657800
EST:     TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACAC                         ATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG
genomic: TTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttc ... tttgacacagATGTGAGCTTGTGTTCGAGAATTGTTTTGTGCCCCATGAAAACGTTCTCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCAGTACTGCACAGAAGTTGGACAAGCTTGGCATGAGAGGAAGTGACACgtatgttttctatttaagaggataaccaaaagagttgcattagattttgcattagattcgtatcttacatatatttttgacacag

- - - - - - - AGAAGT
- - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - -  AGAGGA