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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGgtttgttctattctacaaagctaagttaaatatgcttgagttttggagtcctcagttcaacttaatattgcgtcaatattgtaatatcataatgctcttg...

Basic information

species Oryza sativa
transcript LOC_Os05g03430.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03430.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G455664_T01 (Zea mays), 5'ss of exon 8
AACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGgtttgttct--attctaca-aagctaagttaaatatgcttgagttttgg--agtcctcagttcaacttaatattgcgtcaatattgtaatatcataatgctcttg
| |||| | |||||||| ||||||||| | |||||| ||||| ||| |||| |||||||| |||||||| | |||||| || ||||||||||| |||  | ||| || || ||| |||  || ||| |   |  ||   |     | |  ||  ||| || ||     ||  ||  ||  |||||        
AGCAAGCGCACCTCAAATTGTGGAGAAGACCTTCCAACTTTCCCGAGCAGAAAGAGAAACAGTCCAGAGGCCAGAATACGATCTCCAGgtttgctctccagtctccacaacctaggtttcatttgcctagatcctgataaaattcctgcacattttattaatgtcatgatgctgctatgccataaata-----

upper sequence: LOC_Os05g03430.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G155123_T03 (Zea mays), 5'ss of exon 8
AACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAGgtttgttctattctaca-aagctaagttaaatatgcttgagttttgg--agtcctcagttcaacttaatattgcgtcaatattgtaatatcataatgctcttg
| ||||||||||||||| ||||||||| |  ||||| ||||| ||| ||||||||||||| || ||||||||||||||||| ||||||||||  ||| | || || || |||||||  || ||| |   |  ||   |       |  ||  ||| || ||   | ||  ||  |   |||||     |  
AGCAAGTGTACCTCAAATTGTGGAGAAGACTTTCCAACTTTCCCGAGCAGATAGAGAAACAGTTCAGAGACAAGAATATGATCTCCAGgtttactctctcctccataacctaagtttcatttgcctagatcctgataaaaatcttgcacactttattaatgtcacgatgctgctac-ccataaataaat--