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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgactcttaaccatgttgatgttgccattcag

Basic information

species Oryza sativa
transcript LOC_Os05g02310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgact-cttaaccatgt-tgatgttgccattcag--
||||||||||||||||||||||||||||||| |||||||| || || || || || |||||||| |||||| ||||||| |||| |||   |   | |||  | |    || |  |      ||  | || |  |    | ||||||| ||  |  | | |||| |  |  | |||| ||   
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTTCTACCAGCGAGCGCCGCTTATGAAGCCATACAGCACTCTATgtaagttgatttatcgca--actgtgtcatctcaacacgtatcctcgtttcgac---cttcaagctaaccgcccagcaatgtgttgttcttccatccacag

upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA13G19500.2 (Glycine max), 5'ss of exon 8
-------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtact--tcacttg---cataagtactacaacatactgtacatgttt-gtgtaaaatcac--atcaagctgactcttaaccatgttgatgttgccattcag--------------------------------------------------------------------------------------------
       |||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     ||  ||   ||| |  |||| | | |  | ||    ||  ||      | |   ||||   | |||| |  | || ||||  ||    || |                                                                                             
GAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtc-caattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA13G19500.4 (Glycine max), 5'ss of exon 7
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtact--tcacttg---cataagtactacaacatactgtacatgttt-gtgtaaaatcac--atcaagctgactcttaaccatgttgatgttgccattcag--------------------------------------------------------------------------------------------
                  |||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     ||  ||   ||| |  |||| | | |  | ||    ||  ||      | |   ||||   | |||| |  | || ||||  ||    || |                                                                                             
TCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtc-caattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA13G19500.1 (Glycine max), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtact--tcacttg---cataagtactacaacatactgtacatgttt-gtgtaaaatcac--atcaagctgactcttaaccatgttgatgttgccattcag--------------------------------------------------------------------------------------------
|||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     ||  ||   ||| |  |||| | | |  | ||    ||  ||      | |   ||||   | |||| |  | || ||||  ||    || |                                                                                             
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtc-caattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaag

upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA10G05130.1 (Glycine max), 5'ss of exon 8
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagta-----cttcacttgcataagtactacaacat---------actgtacatgtttgtgtaaaatcacatcaa----gctgactcttaaccatgttgatgttgccattcag
|||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     | ||   | ||| | || | |||  |         | |    |||||| | |  |  | ||  ||        | | | || | | || || |||   |  ||
ACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

upper sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA10G05130.2 (Glycine max), 5'ss of exon 7
------------------ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagta-----cttcacttgcataagtactacaacat---------actgtacatgtttgtgtaaaatcacatcaa----gctgactcttaaccatgttgatgttgccattcag
                  |||||||||||||||||||||| ||||| || || ||||| || |||||    ||||| ||||| || || ||||| ||||||| ||||     | ||   | ||| | || | |||  |         | |    |||||| | |  |  | ||  ||        | | | || | | || || |||   |  ||
CCTTAATAAAGGAATTAGACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAACGACTTTCTTCCTGCTTCAGCTGCCTATGAAGCTATCAAGCATTCCATgtaagtaacagccatcggattcatgattatttcaaggtttcaattttaatacttatgtttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88487192|gb|CI424463.1|CI424463
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|8859734|gb|AU097052.1|AU097052
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88215769|gb|CI215618.1|CI215618
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|2311572|gb|C27727.1|C27727
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATNAGGCCATAAAGCACTCCAT                         GGNTCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|86873320|gb|CI341545.1|CI341545
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|86884666|gb|CI313045.1|CI313045
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88985884|gb|CI033213.1|CI033213
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88981027|gb|CI021154.1|CI021154
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|8594726|gb|AU093264.1|AU093264
EST:     ATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTG
genomic: ATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCC-ATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTG
EST: gi|88543309|gb|CI473307.1|CI473307
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|3761138|gb|C98386.1|C98386
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88959894|gb|CI381772.1|CI381772
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCCTGGAGGGCTTGAGGAGGTAGACTTGTCC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88259427|gb|CI363720.1|CI363720
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88275373|gb|CI395224.1|CI395224
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88537310|gb|CI465137.1|CI465137
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88525673|gb|CI452691.1|CI452691
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|33663513|gb|CF294480.1|CF294480
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88237667|gb|CI237516.1|CI237516
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88537571|gb|CI466532.1|CI466532
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88533757|gb|CI460418.1|CI460418
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88542616|gb|CI471955.1|CI471955
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88526755|gb|CI454838.1|CI454838
EST:     CTGCTTATGAGGCCATAAACCACTCCAT                         -GATTCTTTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTCTG
genomic: CTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGA-TCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTG
EST: gi|38482067|gb|CF966128.1|CF966128
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|3763568|gb|AU030320.1|AU030320
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|87039814|gb|CI194436.1|CI194436
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|86842354|gb|CI335258.1|CI335258
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88544451|gb|CI472550.1|CI472550
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|117243396|gb|CT843443.1|CT843443
EST:     AATGACTTCCTGCCTGCA-GTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATC
EST: gi|88375711|gb|CI525805.1|CI525805
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|87039980|gb|CI194602.1|CI194602
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|88537394|gb|CI465225.1|CI465225
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|86883005|gb|CI314249.1|CI314249
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|86603118|gb|CI357482.1|CI357482
EST:     AATGACTTCCTGCCTCCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATCCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTCTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
EST: gi|8956900|gb|BE230703.1|BE230703
EST:     AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCAT                         GGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC
genomic: AATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 65 (downstream exon)
Score: 19

ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtactt ... tgccattcagGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAAGAAGAATGAGAACAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATgtgagtacttcacttgcataagtactacaacatactgtacatgtttgtgtaaaatcacatcaagctgactcttaaccatgttgatgttgccattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT