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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGGCATACTGTGATGTCAGCATGCCTCCTGAGGGGTTGAGAGAGTTCTTGCCACGCTTAATCCCAgtaactgtccctttccctctttataattagttctgatgcatttgagagctggtcacagtttctttacatattttgcttgcattcatttgtag

Basic information

species Oryza sativa
transcript LOC_Os04g59494.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g59494.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 8
GTCGGCATACTGTGATGTCAGCATGCCTCCTGAGGGGTTGAGAGAGTTCTTGCCACGCTTAATCCCAgtaactgtccctttccctctttataattagttctgatgcatttgagagctggtcacagtttctttacatattttgcttgcattcatttgtag
||| |||||||||||||| |||||||||||||| || ||  | ||||||||||||||||||||||| |||  || || || |  |  ||  | ||||| | | || |  |  | |||||  | | ||||||   | |||    ||   ||| |      
GTCTGCATACTGTGATGTGAGCATGCCTCCTGAAGGTTTACGGGAGTTCTTGCCACGCTTAATCCCGgtatatg-cctttgctgtacttcaatttagtgcagctgtaccttggtgctggatataatttctt---acattccaatttttttcctag----

upper sequence: LOC_Os04g59494.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G312026_T01 (Zea mays), 5'ss of exon 8
GTCGGCATACTGTGATGTCAGCATGCCTCCTGAGGGGTTGAGAGAGTTCTTGCCACGCTTAATCCCAgtaactgtccctttccctctttataattagttctgatgcatttgagagctggtcacagtttctttacatattttgcttgcattcatttgtag
||| |||||||||||||| |||||||||||||| || ||    ||||||||||| | ||||||||| |||  | ||  | |    ||| | | ||||| |   || |  |  | |||    | | || |||      ||    ||   ||| |      
GTCTGCATACTGTGATGTGAGCATGCCTCCTGAAGGTTTACAGGAGTTCTTGCCGCACTTAATCCCGgtatatatctttcttgtacttca-atttagtgcaactgtaccttggtgctttatataattactt---gcgttccaatttttttcctag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58612862|gb|CK040574.1|CK040574
EST:     CTTGCCACGCTTAATCCCA                         ACACTCTTATCAAACATGAGCTATTCTGATGATGAGGAATCACTTGCTGAT
genomic: CTTGCCACGCTTAATCCCAgtaactgtcc ... tcatttgtagACACTCTTATCAAACATGAGCTATTCTGATGATGACGAATCACTTGCTGAT