1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGTATGGATCACTGCTACAATTCAGAAGTGTTCGGTGATGACAACTGGTACAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctaccttgtgcctttttaattctgactatatcagaaataattgatatgaaaataaactggaaaactgatgcaagttttctatcttgtgaatgatgtcatctctgtacattacag
species | Oryza sativa |
transcript | LOC_Os04g57210.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29626709|gb|CB631720.1|CB631720
genomic: GATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29663904|gb|CB660179.1|CB660179
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29663905|gb|CB660180.1|CB660180
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29618214|gb|CB623226.1|CB623226
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29626176|gb|CB631187.1|CB631187
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29679980|gb|CB676255.1|CB676255
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTTTTCCAGCACATATTTCAGAAGEST: gi|29624048|gb|CB629059.1|CB629059
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|58589122|gb|CF987430.1|CF987430
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29671067|gb|CB667342.1|CB667342
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29663603|gb|CB659878.1|CB659878
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAGEST: gi|29679981|gb|CB676256.1|CB676256
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
EST: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAG AGAGACTGGAAAAGGAGCTCCGTGAACTTTTTCCAGCACATATTTCAGAAG
genomic: CAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctacc ... tacattacagAGAGACTGGAAAAGGAGCTCCGTGAACTTCTTCCAGCACATATTTCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATGGATCACTGCTACAATTCAGAAGTGTTCGGTGATGACAACTGGTACAAGACAGTAGTTTTATCCGGTGGATCTTCATGCTTACCTGGTTTATCAGgtatgctaccttgtgcctttttaattctgactatatcagaaataattgatatgaaaataaactggaaaactgatgcaagttttctatcttgtgaatgatgtcatctctgtacattacag
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