1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACATAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatggtcaaacttgttatctcactatgatctgagtatgcatttccgcacttgttcatcaaataccatgctggcatgaacgttctacagaatactgtgttcattccagatcttgcatttgttcatttatcatatcctattttcatctttgttattttttacatatgttattctccatatacag
species | Oryza sativa |
transcript | LOC_Os04g55940.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTGEST: gi|66923908|gb|CX110756.1|CX110756
genomic: TAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatg ... ccatatacagATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTG
EST: TAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTGEST: gi|33381504|gb|CF196847.1|CF196847
genomic: TAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatg ... ccatatacagATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTG
EST: TGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTG ATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTG
genomic: TGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatg ... ccatatacagATTCCATTTTGTGTTGTCATTGGTTGGATGATGGGGCAAAAGATGGACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatggtcaaacttgttatctcactatgatctgagtatgcatttccgcacttgttcatcaaataccatgctggcatgaacgttctacagaatactgtgttcattccagatcttgcatttgttcatttatcatatcctattttcatctttgttattttttacatatgttattctccatatacag
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