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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGTTGCAAGGGAATTCTTTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgcctactgctggcaagaatgtttatacatcgttcttaaatatcaaaggtttcatcaagggaaacattaacaacctatttctgtggtgcag

Basic information

species Oryza sativa
transcript LOC_Os04g52606.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52606.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G126858_T02 (Zea mays), 5'ss of exon 10
GCGGTTGCAAGGGAATTCTTTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgc--ctactgctggcaagaatgtttatacatcgttcttaaatatcaaaggtttcatcaagggaaacattaacaacctatttctgtggtgcag----------
|||||| ||||| ||||| || |||||||||||||||  ||||||| |||||||||| ||  |||||| |||||||||      | || ||| |||| | | ||   | | ||| ||||||| | ||  |  |  ||        | ||  | ||||||||||| | |||          
GCGGTTTCAAGGCAATTCATTCCAAGGTCCACTTCCAAGCACTCTTGCTAATCTTGTTCAGCTAACAAGCTTgtaagtatgatcattggtggtaagagtatctaagtagcattcctaaatattagagtgtataataa--------tcaattatctatttctgtgattcagacgaataggt

upper sequence: LOC_Os04g52606.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G155837_T02 (Zea mays), 5'ss of exon 9
GCGGTTGCAAGGGAATTCTTTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTTGTCCAATTAACAAACTTgtaagtgcctactgctggcaagaatgtttatacatcgttcttaaatatcaaaggtttcatcaagggaaacattaacaacctatttctgtggtgcag
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||       |  |||| |||||   ||   ||  ||||  | |   || | |    ||   ||||   | ||  |||||||||||||||||||
GCGGTTTCAAGGCAATTCATTTCAAGGTCCACTTCCAGCCACTCTTTCTAATCTCGTCCAACTAACAAGCTTgtaag-------taatggctagaataactaagtattattctctagttgtaatgttactttct--ggaagtgtgaagtacctatttctgtggtgcag