1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtctttagattaagtgcactttagttttcagatgaacttgtattgaaaggctgaattttatcctcctcttctatagcaatttttcaagtgtgctgc...
species | Oryza sativa |
transcript | LOC_Os04g48770.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTEST: gi|58687667|gb|CK076354.1|CK076354
genomic: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
EST: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGGAGATGAACTGAAATTCAGGCCGTTTACTGGTTEST: gi|11173107|gb|AU164616.1|AU164616
genomic: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
EST: TGAAAATCNGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTEST: gi|58603204|gb|CK013732.1|CK013732
genomic: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
EST: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGGAGATGAACTGAAATTCAGGCCGTTTACTGGTTEST: gi|86498019|gb|CI140652.1|CI140652
genomic: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
EST: TGAAAATCCGCAGCAACCATCAGTTCCTGCTAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTTEST: gi|86430668|gb|CI083091.1|CI083091
genomic: TGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
EST: CAAGTGAGGCAACTGCTGAAG ATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
genomic: CAAGTGAGGCAACTGCTGAAGgtttgtcttt ... ttcccaccagATGAAAATGCTAAAGTTGAAGATGAACTGAAATTCAAGCCGTTTACTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACGGACTGTGAAGTGGACTTTGCACCTCCTCTTGATTACAAAGAACCTGAAAATCCGCAGCAACCATCAGTTCCTGCAAGTGAGGCAACTGCTGAAGgtttgtctttagattaagtgcactttagttttcagatgaacttgtattgaaaggctgaattttatcctcctcttctatagcaatttttcaagtgtgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG