1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGAAATTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaatatcccctagttatgtttattgaagtgtgacctcagtttttttacattaacacatttgaaaatttatatgcag
species | Oryza sativa |
transcript | LOC_Os04g47520.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCAT GCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCAEST: gi|58668971|gb|CK057657.1|CK057657
genomic: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaat ... ttatatgcagGCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCA
EST: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCAT GCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCAEST: gi|4879575|gb|AU063874.1|AU063874
genomic: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaat ... ttatatgcagGCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCA
EST: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCAT GCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCTTCTCACACCAEST: gi|58655499|gb|CK044179.1|CK044179
genomic: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaat ... ttatatgcagGCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCA
EST: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCAT GCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCA
genomic: TTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaat ... ttatatgcagGCAAGCAACCCTGACAGAGAACGTAGGCACGGTAAGTGCCCTCTCACACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCCTGACATGCTCGCCTTCTCTGGTTGCTACTTTGGAGGTGGGGAAATTGAGAGAAGAGAACTCGGTGCAATCCGTAAGAGATGGAAGACACTGCATgtaagagaatatcccctagttatgtttattgaagtgtgacctcagtttttttacattaacacatttgaaaatttatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA