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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAGgtatcactgaaaatctttacttgttaattttttgtttcatgcatatcttattgccatttctgtacatcacatactatgcaacacatacgcag

Basic information

species Oryza sativa
transcript LOC_Os04g47240.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g47240.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G175504_T01 (Zea mays), 5'ss of exon 7
ATCAATGGGCAGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAGgtatc--actgaaaatctttacttg---------ttaattttttgtttcatgcatatcttattgccatttctgtacatcacatacta----tgcaacacatacgcag
|||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||    | ||||  ||||   ||          ||  |||||  ||  |||   |||  |||   ||||||||  |  | ||||||    |||| |||| | ||||
ATCAATGGGCAGCACTGTCCTTTTTCATTTAAGGGTAGTCCATACTGGATGGCTCCAGAGgtactgaaatgaagctcttcctttagtttgtatttttttttttaattcaatgtgcatcacattataatttctgttaacaaaatactaaccatgcagcacaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58677676|gb|CK066363.1|CK066363
EST:     AGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAG                         GTTATAAAAAACTCAAATGGGTGCA
genomic: AGCAGTGTCCTTTCTCCTTTAAGGGTAGTCCATATTGGATGGCTCCAGAGgtatcactga ... acatacgcagGTTATAAAAAACTCAAATGGGTGCA