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TTATTGGAGTTCGTGGAACTGAAACACCAGAAGATCTCATAACCGATGGATTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAAgtaattccctcttgatagccatctcgtctattcttatctaatctttctactcttgtggtcaaaattagtctttttttttcctcacggactacttgctgca...
species | Oryza sativa |
transcript | LOC_Os04g41200.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAA ATGTGAACAGTTACCTGCAACTACAAGGGAGAGAGTTATTTCTACCTTTCCEST: gi|58672986|gb|CK061672.1|CK061672
genomic: TTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAAgtaattccct ... aattcttcagATGTGAACAGTTACCTGCAACTACAAGGGAGAGAGTTATTTCTACCTTTCC
EST: TTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAA ATGTGAACAGTTACCTGCAACTACAAGGGAGAGAGTTATTTCTACCTTTCC
genomic: TTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAAgtaattccct ... aattcttcagATGTGAACAGTTACCTGCAACTACAAGGGAGAGAGTTATTTCTACCTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTGGAGTTCGTGGAACTGAAACACCAGAAGATCTCATAACCGATGGATTATGCAGAGAATGTGCATTTACTATGGAGGATTTGGATGGACTAGTAAAgtaattccctcttgatagccatctcgtctattcttatctaatctttctactcttgtggtcaaaattagtctttttttttcctcacggactacttgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA