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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTGgtacgttgtaaacaatgttcagtgcgttggatttaaaataagaatattccatcattttttttctatattctcctagtgccttttcttttgatctttccattttgtttgcaagagacaag

Basic information

species Oryza sativa
transcript LOC_Os04g41100.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g41100.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G179097_T01 (Zea mays), 5'ss of exon 8
---------------------------------------------------------------------------CAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTGgtacgttgtaaacaatgttcagtgcgttggatttaaaataagaatattccatcattttttttctatattctcctagtgccttttcttttgatctttccattttgtttgcaagagacaag
                                                                            | | |||||| |||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |                                                                                             
TAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtggcgtgttggcttttattggtta-caccagtttcacctttggaacttctctatgtaaaatattccagattggtacgttgtaaacaatgtccagtgtg---------------------------------------------------------------------------------------------

upper sequence: LOC_Os04g41100.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G139038_T01 (Zea mays), 5'ss of exon 8
CAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTGgtacgttgtaaacaatgttcagtgcgttggatttaaaataagaatattccatcattttttttcta-tattctcctagtgccttttcttttgatctttccattttgtttgcaagagacaag
              |  ||| |    | | |  ||   |     |  |     |||  |    |    |    ||| | |  | |||  | |  | |||  |||    || |   |  |   | |    |        |   | |      |   |   |    | || |   | || |  || | |  |||    ||   |  |  || ||  ||    
-------------TTTGATCTTTGCATTTTGTTTGCAAGAGACGAAAGAAGCGCAGGGGAAGGAAGCCTTTTGCTTTTATCAGGAAATCAATG-ACATTAATACAACTTAGAAGgtaatatat-caaaagccaattgctgcaagtgacgtgttgctaactagaaactaatgaacgagggagttctttactgaaaaatcaggt--gcatgaaatggat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623101|gb|CB628112.1|CB628112
EST:     TAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTG                         AGAAGCGAAGGGGAAGGATGCCTTTTGCTTTTCACCAGGAAATCAATGGAC
genomic: TAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTGgtacgttgta ... aagagacaagAGAAGCGAAGGGGAAGGATGCCTTTTGCTTTTCACCAGGAAATCAATGGAC