1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGTCAAAGTCAGGAAAGCTGCGTCCATGGGATGGGCCTTTCCTTTGCCACAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaactttgttacagttccattttatgcgacttgtcagtccaaagtcacatttgtaatagagtcctgttgtacatgcag
species | Oryza sativa |
transcript | LOC_Os04g37660.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAG ATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTCEST: gi|29619327|gb|CB624339.1|CB624339
genomic: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaacttt ... gtacatgcagATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
EST: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAG ATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTCEST: gi|58688260|gb|CK076947.1|CK076947
genomic: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaacttt ... gtacatgcagATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
EST: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAG ATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTCEST: gi|29619328|gb|CB624340.1|CB624340
genomic: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaacttt ... gtacatgcagATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
EST: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAG ATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTCEST: gi|25804665|gb|CA760626.1|CA760626
genomic: CAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaacttt ... gtacatgcagATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
EST: GGAAAAGAAAGAAGCAATGGAAGGAGAACGTCACTCACGAG ATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
genomic: GGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaacttt ... gtacatgcagATTCCTCCTCAAGAAACAGTGGGTCAAGTGAATAGTAGCCAAGTTGGAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCAAAGTCAGGAAAGCTGCGTCCATGGGATGGGCCTTTCCTTTGCCACAGTTGCCAGGAAAAGAAAGAAGCAATGGAAGGAAAACGTCACTCACGAGgtacaactttgttacagttccattttatgcgacttgtcagtccaaagtcacatttgtaatagagtcctgttgtacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA