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CCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCATCCAAAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaacttatcgtacttgtttattcgtccttgggcaggatacatcaaattactgccaacattaatcattaattagttttttttctggcacacag
species | Oryza sativa |
transcript | LOC_Os04g35190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGGTGATTGTGTA-TTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|58691809|gb|CK080496.1|CK080496
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGTGCGTCGCTACACACTAGTTAGGATGEST: gi|218488546|gb|FG955819.1|FG955819
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACATATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|29645691|gb|CB650698.1|CB650698
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|66924057|gb|CX110905.1|CX110905
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACATATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|29655901|gb|CB652176.1|CB652176
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATATAACTGGCACTCCTGTATCEST: gi|29655902|gb|CB652177.1|CB652177
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATC
EST: CAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|29623230|gb|CB628241.1|CB628241
genomic: CAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATGEST: gi|86481675|gb|CI124308.1|CI124308
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
EST: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAG ATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
genomic: AAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaactta ... tggcacacagATAGAACTGGCACTCCTGTATCCAGGGCGTCGCTACACACTAGTTAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCACAGAAGATTAAGGATGTTGTCAAGTGCATGCATTTCCGGGCATCCAAAGGTGATTGTGTATTTAAAGGCGACTACGTATTGTCAGAGGATGGCCAGgtgaaacttatcgtacttgtttattcgtccttgggcaggatacatcaaattactgccaacattaatcattaattagttttttttctggcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG