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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagcttatattattcatctgtatcttttcactattttttttatttgtataaccgaccttcctaacatttctatttacag

Basic information

species Oryza sativa
transcript LOC_Os04g33770.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g33770.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv08s0007g02890.t01 (Vitis vinifera), 5'ss of exon 9
GACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagcttatattat--tcatctgtatcttttcactattttttttatttgtat------aaccgacctt--------cctaacatttctatttacag--------
 ||| || |||||  | |||||| |  | ||||||||||| |||||||| ||||| || ||| | |||||| | |||||||| ||||| |||||||  | ||| || ||  |  ||    ||||| || |  ||  ||||   ||||       || ||  ||        | || |||| || |||  |         
AACCGAATCCACATATGGGGCATTTGTCTTGGGCTGATGCCTTTGTCATCACAGCTGATTCAGTGAGTATGTTGAGTGAGGCTTGTAGTACTGGgtatgtttaaataatggttttcaccctctttgcaatggttggtttaaaagtattttttagactgaagtttatcggttcttatcattactttttttaattttgcag

upper sequence: LOC_Os04g33770.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 5'ss of exon 8
GACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagctt--atattattcatctgtatcttt--tcactattttttttatttgtataaccgaccttcctaacatttctatttacag------------------------------------------------------------------
 ||| || |||||| | || ||||| || |||||||||||||||||  | |||||||| ||| | |||||| |||||||||| || ||||| ||||  ||||    |  ||| | |  |||  ||  | |  ||||     || |  ||   |    || ||    ||||  ||||                                                                     
AACCAAATCCACACATGGGACATCTAGCTTGGGCTGATGCTTTTGTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGGgtatgcttcagaagaatttacccctatgattgatgataatttggagcatcttgatgttctctttttct---ttttccttttaggatatgatacttgtttatattctcttattatattgcaatattagttatttcaatttttgttgctgtag

upper sequence: LOC_Os04g33770.1 (Oryza sativa), 5'ss of exon 8
lower sequence: EFJ16469 (Selaginella moellendorffii), 5'ss of exon 9
GACCCAACCCACACCTTGGGCATCTTGCATGGGCTGATGCTTTTGTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagcttat--attattcatctgtatcttttcactattttttttatttgtataaccgaccttcctaacatttctatttacag
| || || |||||| | || || ||||| ||||  ||||| |||||| | |||||||||||||| || ||| | || ||||| |||||||| |||||||| | |  | | ||| | |  ||  | | | |  ||  || ||||||     | || |    |                
GTCCAAATCCACACTTGGGACACCTTGCGTGGGGGGATGCCTTTGTCGTCACAGCAGACTCAATCAGCATGTTGAGCGAGGCGTGTAGCACAGGgtgagcgtgtgaactgttcgtatccatgctat-atttcttcattgatttgttctttcaacttctgcag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86505480|gb|CI148113.1|CI148113
EST:     GTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGG                         GAAACCTGTTTATGTTGTTGGAACTGAGCACTGCAGGTGGAAATTCTCGGA
genomic: GTCATAACAGCAGACTCAATTAGTATGCTAAGTGAGGCATGTAGCACTGGgtgagcttat ... ctatttacagGAAACCTGTTTATGTTGTTGGAACTGAGCACTGCAGGTGGAAATTCTCGGA