Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTATTGCCCCTAGTTTGTATGCACCGGTGCACCAGCATTTCTTTGTCACCCGTATGGACATGGCAGTTGATTGCAAACCAAATGAGGCCTATAATCAGgtatgtttgcccatcatccatgcatcttagttgtccacatgcatcggctacttccagtatgatattgttccatgccctattatcttgtttatttttcgtg...

Basic information

species Oryza sativa
transcript LOC_Os04g04950.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA01G03200.1 (Glycine max), 5'ss of exon 2
--TACTATTGCCCCTAGTTTGTATGCACCGGTGCACCAGCATTTCTTTGTCACCCGTATGGACATGGCAGTTGATTGCAAACCAAATGAGGCCTATAATCAGgtatgtttgcccatcatccatgcatcttagttgtccacatgcatcggctacttccagtatgatattgttccatgccctattatcttgtttatttttcgtg
      |  | |   | | ||     ||   |||||| | |||   |   |||| ||||||||||||||||||||||||| ||   ||| || | |||||||||  || |||     | | || | | | | ||| | |  |   |       |||    ||| |   ||   | |                          
CAGGTGAAAGTCGAAAATATGGCACGACTATTGCACCTGGATTATATG--CACCTGTATGGACATGGCAGTTGATTGCAAGCCCGGTGAAGCATTTAATCAGgtcagtgtgc-----aactatacttttcatttggcaatgtcttt------attcttcaatgctgaagtctgaag--------------------------

upper sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA02G04360.1 (Glycine max), 5'ss of exon 8
TACTATTGCCCCTAGTTTGTATGCACCGGTGCACCAGCATTTCTTTGTCACCCGTATGGACATGGCAGTTGATTGCAAACCAAATGAGGCCTATAATCAGgtatgtttgcccatcatccatgcatcttagttgtccacatg--catcggctacttcc--agtatgatattgttccatgccctattatcttgtttatttttcgtg
 |||||||| ||| | || |||||||| || ||||| || || |||||  | |||||||||||||| ||||||||||| ||   ||| || | |||||||||  || |||  |  ||  || | | | ||||| | |  |   |||     | | |   ||| ||| |   |    ||    | |   |  |  || ||| |  
GACTATTGCACCTGGATTATATGCACCTGTCCACCAACACTTTTTTGTTGCTCGTATGGACATGGCTGTTGATTGCAAGCCTGGTGAAGCATTTAATCAGgtcagtgtgca-actat--atacttttcagttggcaatgtcttcattcttcaatgctgaagtctgaaagaatattttggttgactcattcttcaatattttga-

upper sequence: LOC_Os04g04950.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 8
TACTATTGCCCCTAGTTTGTATGCACCGGTGCACCAGCATTTCTTTGTCACCCGTATGGACATGGCAGTTGATTGCAAACCAAATGAGGCCTATAATCAGgtatgtttgcccatcatccatgcatcttagttgtccacatgcatcggc-tacttccagtatgatattgttccatgccctattatcttgtttatttttcgtg
 |||||||| ||| | || |||||||| || || ||||| ||||||||  | |||||||||||||| |||||||| || ||    ||| | |  |||||||||  |||        |    | |||||   | |       | | ||  |  ||||  | | | ||| | | ||   |    || |    | | |    | 
AACTATTGCACCTGGATTATATGCACCAGTCCATCAGCACTTCTTTGTAGCTCGTATGGACATGGCTGTTGATTGTAAGCCTGGGGAGACATTCAATCAGgtaaatttataagagttttcaggatctttccttttttatgactttggtattgttcctttgtaagatt-tccaatattcataaatttccaatgtctaatatt