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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttcttttcaaattatgttgctactgaattgtattactgaaattagcaactacttatattatccagtcaaacatagatgcagatcttcatcagt...

Basic information

species Oryza sativa
transcript LOC_Os03g64219.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g64219.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G035150_T02 (Zea mays), 5'ss of exon 9
TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttcttttcaaattatgttgctactgaattgtattactgaaattagcaactactt----atattatccagtcaaacatagatgcaga-tcttcatcagt--------------------------------------------------------------------------------
|| ||||||||||| |||||||||||||||||||||||||| || || ||||| || |||||||||||| |||||||   |||||||||  ||| ||||| ||||   ||| ||  || ||||  |||      |  || | |  |     |||| |      ||  | |  | |  | |||  ||   |                                                                                
TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcagaggttttggctatctaaactcagaagtcctgttgtgcag

upper sequence: LOC_Os03g64219.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G035150_T04 (Zea mays), 5'ss of exon 8
TATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttcttttcaaattatgttgctactgaattgtattactgaaattagcaactactt----atattatccagtcaaacatagatgcaga-tcttcatcagt-----------------------------------------
|| ||||||||||| |||||||||||||||||||||||||| || || ||||| || |||||||||||| |||||||   |||||||||  ||| ||||| ||||   ||| ||  || ||||  |||      |  || | |  |     |||| |      ||  | |  | |  | |||  ||   |                                         
TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAGgtaatgtttattttctaatttaattgttatcgagttgttgtacctgccctcacatcaaaatctgagtattgtttgcctaagtaaaccttctcactctgtatatatctcgggcatatttcccaatgggtgtttttgttgatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88284862|gb|CI406308.1|CI406308
EST:     AGATACTTGGTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|29671297|gb|CB667572.1|CB667572
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|88519032|gb|CI446686.1|CI446686
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|88840178|gb|CI079632.1|CI079632
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|33681506|gb|CF309745.1|CF309745
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|87019141|gb|CI297342.1|CI297342
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAG
EST: gi|88842564|gb|CI081820.1|CI081820
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|86418296|gb|CI032505.1|CI032505
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|88514108|gb|CI441614.1|CI441614
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
EST: gi|88840177|gb|CI079631.1|CI079631
EST:     AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG                         TTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG
genomic: AGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAGgtaacctttc ... aaaaacccagTTATATGCTTGAGTTTTTGGGCTGAGGTGCACTACAACTCGATATATCCAG