1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaatttacacattgagttattcatgggaactatacttcgcttttctttatgtacctaagacttttgagttgtctag
species | Oryza sativa |
transcript | LOC_Os03g63020.4 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29644979|gb|CB649986.1|CB649986
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29663527|gb|CB659802.1|CB659802
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: ACGAAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|34996388|gb|CF569133.1|CF569133
genomic: ACG-AAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29666009|gb|CB662284.1|CB662284
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: ACGAAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29666008|gb|CB662283.1|CB662283
genomic: ACG-AAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29638287|gb|CB643296.1|CB643296
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: ACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|29656192|gb|CB652467.1|CB652467
genomic: ACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|33381337|gb|CF196680.1|CF196680
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATTEST: gi|218497584|gb|FG955131.1|FG955131
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
EST: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAAT GTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
genomic: CACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaattt ... agttgtctagGTGGGCAACTGGGTACCAAGGCCACTCCATGCCTCTCACACAAAGACAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTTTGTTCCTGGGATCCACGAAGAAGGCCAACTGCTGAGCAATCACTACAGCATCCGTTCTTTAATgtactaatttacacattgagttattcatgggaactatacttcgcttttctttatgtacctaagacttttgagttgtctag
- - - - - - - - - - CGAAGA
- - - - - - - - - - - AAGAAG