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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGgtaatgttccatctccatggatctatctggataattgaaatagaaatagaattctgtgaagctgttaatgacatatgtttgttttttcag

Basic information

species Oryza sativa
transcript LOC_Os03g58240.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29636549|gb|CB641558.1|CB641558
EST:     AGAATTCTATGGAAGAGTGAAG
genomic: AGAATTCTATGGAAGAGTGAAG
EST: gi|29629845|gb|CB634854.1|CB634854
EST:     AGAATTCTATGGAAGAGTGAAG
genomic: AGAATTCTATGGAAGAGTGAAG
EST: gi|29666666|gb|CB662941.1|CB662941
EST:     AGAATTCTATGGAAGAGTGAAG
genomic: AGAATTCTATGGAAGAGTGAAG
EST: gi|29629844|gb|CB634853.1|CB634853
EST:     AGAATTCTATGGAAGAGTGAAG
genomic: AGAATTCTATGGAAGAGTGAAG