Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag

Basic information

species Oryza sativa
transcript LOC_Os03g57680.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G141535_T01 (Zea mays), 5'ss of exon 8
GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
|||||||| ||| | || || |||| |||||| || ||| | |||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||  | |  | | ||     ||||      |  ||| |||  |||   || ||    |     |  |  ||  |       | | ||||                                       
GTGGAAGTTGATATCCTAACAGGAGCAACCACAATTCTGCGAAGCGACCTGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagcta-taaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctc-----ctctaaaaacactgttcatcatttatccag-----------------------------------

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G141473_T01 (Zea mays), 5'ss of exon 8
GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
|||||| | ||||||||||| |||| ||| || || || ||||| ||||| || ||||| || ||||| ||| |||| |||||||| ||||||||||||||||  |     |  |||    || ||    | || || ||||   ||        |||||        |  ||  || |    | | | | |                                      
GTGGAAATTGATGTGCTGACAGGAGCAACAACAATTCTAAGGAGTGACCTTGTCTACGATTGCGGGCAAAGCTTGAACCCTGCTGTCGACTTGGGCCAGgtcaacctgaaaataaaaaccgctccagctgaccactt-catca--aaggaaatatgttgc-----tcctctaaacattattcttcattaacacag-----------------------------------

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G019799_T01 (Zea mays), 5'ss of exon 8
GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
|||||||| ||||| ||||| |||| |||||| |||||  ||||||||||| |  | ||||| |||||||||||||| ||||| || ||| | |||||||| || |        || ||         | | |  ||||      || | |||  | |   ||  || ||| |       |   |                                             
GTGGAAGTTGATGTACTGACAGGAGCAACCACGATCCTACGGAGCGACCTCATTCATGACTGCGGGCAGAGCCTGAACCCTGCAGTAGACCTTGGCCAGgttagcctcaaacaaaacttgatgctgttagaccgtttgccaacagaaatatgc-tgctctgaa--cactgctattgattcactcag--------------------------------------------

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G124175_T01 (Zea mays), 5'ss of exon 3
GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaa--ttaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
|||||| | ||||| ||||| |||| ||| || || || ||||| ||||| || ||||| || ||||| ||| |||| |||||||| || |||||||||||||| |     || |||  |     |     |||   |  | ||  |||      |   | |        |  ||  || |    | | | | |                                      
GTGGAAATTGATGTCCTGACAGGAGCAACAACAATTCTAAGGAGTGACCTTGTCTACGATTGCGGGCAAAGCTTGAACCCTGCTGTCGATTTGGGCCAGgtcagccccaaaacaaaagctggtgctggtcctattgatcacttcatcaa----aggaaatacgctgctcctctaaacattattcttcattaacacag-----------------------------------

upper sequence: LOC_Os03g57680.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G141535_T02 (Zea mays), 5'ss of exon 1
-GTGGAAGTCGATGTGCTGACGGGAGAAACCACCATCCTGAGGAGCGACCTCGTGTACGACTGTGGGCAGAGCCTGAATCCTGCTGTGGACTTGGGCCAGgtcagtcaatctactaaattaccttcaaaatatcagttgcatctgcaattctgcgcgttgcaaaatcattgcaagaatgagatgtaaattatatgtgatctgaatgtgcaatcgttgttttttgtgatcag
 |||||||| ||| | || || |||| |||||| || ||| | |||||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||||||  | |  | | ||     ||||      |  ||| |||  |||   || ||    |     |  |  ||  |       | | ||||                                       
GGTGGAAGTTGATATCCTAACAGGAGCAACCACAATTCTGCGAAGCGACCTGGTGTATGACTGCGGGCAGAGCCTAAACCCTGCTGTAGACTTGGGCCAGgtcagcta-taaaatgaacacagttcacgcagaccattgtatcaacaaaaatgtgctcctc-----ctctaaaaacactgttcatcatttatccag-----------------------------------