1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtccttgcatgtcatttttgtgcagcgtatcttgaatgttcagtactcgattccagaaaacatggacatatctccagaatgtaggcatctaatttc...
species | Oryza sativa |
transcript | LOC_Os03g55600.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG AGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTEST: gi|25807738|gb|CA763699.1|CA763699
genomic: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
EST: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG AGGATATCAATCCCAGAAATGCGGAGCCATGGCTGGTTCTTGAAGACCCTTEST: gi|58693720|gb|CK082407.1|CK082407
genomic: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
EST: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG AGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTEST: gi|22307593|gb|BQ908815.1|BQ908815
genomic: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
EST: ATGTTAGCCATCNTAATTTCGAGGATTTTTTGTCGGGGGATCCGTCTTTG AGGATAACAATCCCCGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTEST: gi|86259671|gb|CI065544.1|CI065544
genomic: ATG-TAGGCATC-TAATTTCGAGGA-TTTTTGTC-GGGGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
EST: GGATCCGTCTTTG AGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTTEST: gi|6117751|gb|AU081022.1|AU081022
genomic: GGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
EST: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTG AGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
genomic: CAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtcctt ... gcaaatgcagAGGATAACAATCCCAGAAATACGGAGCCATGGCTGGTTCTTGAAGAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTATCTTGAATGTTCAGTACTCAATTCCAGAAAACGTGGACATATCTCCAGAATGTAGGCATCTAATTTCGAGGATTTTTGTCGGGGATCCGTCTTTGgtgagtccttgcatgtcatttttgtgcagcgtatcttgaatgttcagtactcgattccagaaaacatggacatatctccagaatgtaggcatctaatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaca