1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACATAATAGGAAGCCATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcgttgcctttcaatcaacctactggcttagtcatctcttatttgatgtattttgacatgtttctacctatatag
species | Oryza sativa |
transcript | LOC_Os03g55490.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|29644831|gb|CB649838.1|CB649838
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|29643382|gb|CB648389.1|CB648389
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|66915335|gb|CX102183.1|CX102183
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|86595025|gb|CI260264.1|CI260264
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|88521841|gb|CI449006.1|CI449006
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: AATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTEST: gi|88322225|gb|CI537808.1|CI537808
genomic: -ATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
EST: CATGGTCAATNTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAG GCTATTNATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
genomic: CATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcg ... acctatatagGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATAATAGGAAGCCATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGgtgatttgcgttgcctttcaatcaacctactggcttagtcatctcttatttgatgtattttgacatgtttctacctatatag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG