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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCGACATGCGGCACATGTTCTCTTCGATAGAAAAATTGAAGGATCAGTTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcatcctgcatcatgttggcctgctttcaattctctcttaagcatgattcaagtggccttagattaattttgtataacgtgtgttgtgttaatgcacag

Basic information

species Oryza sativa
transcript LOC_Os03g53750.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G171998_T01 (Zea mays), 5'ss of exon 8
CTTTCGACATGCGGCACATGTTCTCTTCGATAGAAAAATTGAAGGATCAGTTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcat--cctgcatcatgttggcctgctttcaattctctcttaagcatgattcaagtggccttagattaattttgtataacgtgtgttgtgttaatgcacag
||||||  |||  ||||||||  | | | | ||| |||| || ||  |  |||| ||||||||| | ||||||||||||||||||||  ||||||||||||| || ||||  |||  || ||  |||    |    |||| || | ||        |  ||||   ||  ||  ||      || |   || || ||       |||
CTTTCGCTATGTAGCACATGTAATTTACAAGAGAGAAATAGAGGGTCCTCTTGACTTCAGAATCCTCCGAAATTCAGATTTTCGTGAAATTACACTGGAGgtaaactcattcccttgatgatcatggaaaaccagtaattttcacctag------cttgagtga--ttgtatgtataacaattagcaaatgctgcgtgtgctagcag

upper sequence: LOC_Os03g53750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G456690_T01 (Zea mays), 5'ss of exon 8
CTTTCGACATGCGGCACATGTTCTCTTCGATAGAAAAATTGAAGGATCAGTTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcatcctgcatcatgttggcctgctttcaattctctcttaagcatgattcaagtggccttagattaattttgtataacgtgtgttgtgttaatgcacag
||||||  |||  ||| ||||  | | | | ||| |||| || ||  |  |||| |||||||||||  |||||||||||||||||||  ||||| ||||||| |  |||| |  | | |||   | | |       ||   | ||   | |   |  ||||    ||  |  ||      || |   || || ||       |||
CTTTCGCTATGGAGCAAATGTAATTTACAAAAGAGAAATAGAGGGTCCTCTTGACTTCAGAATCTTGAGAAATTCAGATTTTCGTGAAATTACATTGGAGgtaacctcattcc-cttgatggatggcagaaaatcgttaattattttacctagctggagtga--atatgtgtataacaattagcaaatgctgcgtgtgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29638417|gb|CB643426.1|CB643426
EST:     TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAG                         GTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
genomic: TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcat ... taatgcacagGTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
EST: gi|29667391|gb|CB663666.1|CB663666
EST:     TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAG                         GTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
genomic: TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcat ... taatgcacagGTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
EST: gi|29667390|gb|CB663665.1|CB663665
EST:     TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAG                         GTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
genomic: TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcat ... taatgcacagGTGGAGGGCAAACCTGTTCTTAAGTTTGCACTTTGTTATGGATTCAGAAAT
EST: gi|218489808|gb|FG954312.1|FG954312
EST:     TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAG                         GTGGAGGGCAAACCTG
genomic: TTGATTTCAGAATCTTACGAAATTCAGATTTTCGTGAGGTTACACTGGAGgtgaattcat ... taatgcacagGTGGAGGGCAAACCTG