1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAACTTTGTACATGAAAAAGGACCATCAATTGAGGATGTCATTAAACAACAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgttaatttttttcctcaggcagatttttttaaaaaaaaagacatactcataccctttcgttcttcaacatatggtttctgcag
species | Oryza sativa |
transcript | LOC_Os03g52340.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88539718|gb|CI469698.1|CI469698
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88512657|gb|CI440163.1|CI440163
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|29619060|gb|CB624072.1|CB624072
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTTTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGGAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|58593304|gb|CF991612.1|CF991612
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGGAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|58606099|gb|CK034132.1|CK034132
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGGAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88470988|gb|CI408259.1|CI408259
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGGTCTTGTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGGTAAAGTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88485242|gb|CI422513.1|CI422513
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTGTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88277321|gb|CI398123.1|CI398123
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAAGTGAGATGTATTTACAACTTTGATCCATAGTAGGACAATGATGEST: gi|86500373|gb|CI143006.1|CI143006
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88472627|gb|CI409898.1|CI409898
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|29657857|gb|CB654132.1|CB654132
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|88553381|gb|CI483489.1|CI483489
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: AGAGCTCTTCTACTGTGAAAGCCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGNACAATGATGEST: gi|88503492|gb|CI430998.1|CI430998
genomic: AGAGCTCTTCTACTGTGAAA-CCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATGEST: gi|33679109|gb|CF307348.1|CF307348
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
EST: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATA GCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
genomic: CAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgtta ... gtttctgcagGCGTTAAACTGAGATGTATTTACAACTTTGATCCATACTAGAACAATGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACTTTGTACATGAAAAAGGACCATCAATTGAGGATGTCATTAAACAACAGAGCTCTTCTACTGTGAAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgttaatttttttcctcaggcagatttttttaaaaaaaaagacatactcataccctttcgttcttcaacatatggtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT