1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCATTTGTTGTGGAAAAGAAGCAAACCACCTAAGTTTCCCACCAGATACAATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatacttatggtcgcaacaagttatcatattcacttcatactgagatctgactaacaacaacaaccag
species | Oryza sativa |
transcript | LOC_Os03g49770.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAEST: gi|86481119|gb|CI123752.1|CI123752
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
EST: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAEST: gi|25806343|gb|CA762304.1|CA762304
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
EST: ATTTTACTCGCTTTGCAATCACATTAAATGGACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAEST: gi|11233415|gb|AU164827.1|AU164827
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
EST: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAEST: gi|66923661|gb|CX110509.1|CX110509
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
EST: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAEST: gi|29682318|gb|CB678593.1|CB678593
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
EST: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAG GAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
genomic: ATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatac ... caacaaccagGAAAAACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTTGTTGTGGAAAAGAAGCAAACCACCTAAGTTTCCCACCAGATACAATTTTACTCGCTTTGCAATCACATTAAATGAACTTACCGCTGGATTGAAGgtaaatatacttatggtcgcaacaagttatcatattcacttcatactgagatctgactaacaacaacaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG