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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCATCAACCAATACACAGCTAGCTACATGAAGGGCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttccttgcctcgcctcgccttgcgcttgtacatcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcag

Basic information

species Oryza sativa
transcript LOC_Os03g49600.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g49600.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AC217401.3_FGT001 (Zea mays), 5'ss of exon 8
ATTGGCATCAACCAATACACAGCTAGCTACATGAAGGGCCAGCAATTGATGCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttccttgcctcgcctcgccttgcgcttgtacatcagtatcgttgctagacatattctcctaaatattttatcccctaaattctgcag
||||| ||||| |||||||| ||||||||| ||||||||||| || || | |||||||  || || || |||||||| ||||||||||||   ||||||||||||||| ||||||    | | ||   |||| ||| | |||        |||| |  |  | |   ||  ||| ||||||||||| |||||
ATTGGGATCAATCAATACACCGCTAGCTACGTGAAGGGCCAGAAACTGCTCCAGCAGAAGCCTACTAGCTACTCAGCTGATTGGCAGGTTCAATATGTTTgtgagttc-ttgcct----tagactcaagctt-tacctgagt-------ttagatacttcttgcctgatcatttgtcccctaaattatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86593847|gb|CI260076.1|CI260076
EST:     CAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|428512|gb|D24663.1|D24663
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTNCGAAAAACGGCAAACCAATTGGCCCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29657771|gb|CB654046.1|CB654046
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|325494326|gb|JG458850.1|JG458850
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29678658|gb|CB674933.1|CB674933
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|163928475|gb|EG711363.1|EG711363
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27576307|gb|CA999001.1|CA999001
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27577942|gb|CB000637.1|CB000637
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|88996445|gb|CI259949.1|CI259949
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|33683958|gb|CF312197.1|CF312197
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29667349|gb|CB663624.1|CB663624
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|8856614|gb|AU093932.1|AU093932
EST:     GAGTTATTCAGCCCGATTGGCCAGGTTCCCTATGTTT                         TTCCGGAAAAACGGCAANCCCAATTGGACCACAG
genomic: GAGTTACTCAG-CCGATTGG-CAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGC-GAAAAACGGCAA-ACCAATTGGACCACAG
EST: gi|29672037|gb|CB668312.1|CB668312
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|3107762|gb|D43502.1|D43502
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTCCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58657255|gb|CK045935.1|CK045935
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|89197084|gb|CI021924.1|CI021924
EST:     GCAGGTTACCTATGTTT                         TTGCGAAAAACAGCAAACCAATTGGACCACAG
genomic: GCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29659818|gb|CB656093.1|CB656093
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29671917|gb|CB668192.1|CB668192
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58673266|gb|CK061952.1|CK061952
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86828091|gb|CI274966.1|CI274966
EST:     CTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|163928720|gb|EG711233.1|EG711233
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58664218|gb|CK052904.1|CK052904
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAGGCA
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAGGCA
EST: gi|88976936|gb|CI257632.1|CI257632
EST:     AGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: AGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86501795|gb|CI144428.1|CI144428
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58679400|gb|CK068087.1|CK068087
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|14981080|gb|BI305771.1|BI305771
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACATATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|88844856|gb|CI022210.1|CI022210
EST:     CAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29638181|gb|CB643190.1|CB643190
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|9884520|gb|BE607353.1|BE607353
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86495823|gb|CI138456.1|CI138456
EST:     GCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86498278|gb|CI140911.1|CI140911
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87029134|gb|CI276402.1|CI276402
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|218499918|gb|FG954902.1|FG954902
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|29667383|gb|CB663658.1|CB663658
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|86494154|gb|CI136787.1|CI136787
EST:     GTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87010187|gb|CI279284.1|CI279284
EST:     GACGAGTTATTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58598612|gb|CK009140.1|CK009140
EST:     GCAGCAGACACCGACGAGTTACTCAGGCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|33676122|gb|CF304361.1|CF304361
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|58671738|gb|CK060424.1|CK060424
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|27577236|gb|CA999930.1|CA999930
EST:     GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: GCAGCAGACACCGACGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG
EST: gi|87038444|gb|CI193066.1|CI193066
EST:     CGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTT                         TTGCGAAAAACGGCAAACCAATTGGACCACAG
genomic: CGAGTTACTCAGCCGATTGGCAGGTTACCTATGTTTgtgagttcct ... aattctgcagTTGCGAAAAACGGCAAACCAATTGGACCACAG