1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGCTATTGGGAATCCATTTCCGAGCTCCCAATCACCTGAAGCGTATCACATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtactaaaccttaagtacatctgagttctctttattatattcctctgaaaatttgtccttttactaaatctgaagtcaggactacaccagattctttatatcattacatcaaccaattgcctatcttcagcttttgacttccatttgttgcctaatggtaatatcttagtctttttttcaccttaatcag
species | Oryza sativa |
transcript | LOC_Os03g49510.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAAT GTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACEST: gi|29685720|gb|CB681995.1|CB681995
genomic: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
EST: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAAT GTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACEST: gi|29668306|gb|CB664581.1|CB664581
genomic: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
EST: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAAT GTAGTGTTGCCCTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACEST: gi|33798033|gb|CF324876.1|CF324876
genomic: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
EST: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAAT GTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACEST: gi|33800688|gb|CF326214.1|CF326214
genomic: ATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
EST: TTTCAGCTGAAACGGAAT GTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACEST: gi|33800571|gb|CF326156.1|CF326156
genomic: TTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
EST: CATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAAT GTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
genomic: CATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtacta ... ccttaatcagGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTATTGGGAATCCATTTCCGAGCTCCCAATCACCTGAAGCGTATCACATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATgtacgtactaaaccttaagtacatctgagttctctttattatattcctctgaaaatttgtccttttactaaatctgaagtcaggactacaccagattctttatatcattacatcaaccaattgcctatcttcagcttttgacttccatttgttgcctaatggtaatatcttagtctttttttcaccttaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA