1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTGTAGCTCTAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctgactaatctcttcagtcattacgagtaaattgctgtaatagttcacaggaaaaggagatcaaacagcttaacttactattgactgtcttcttgatattatacattttttccattacag
species | Oryza sativa |
transcript | LOC_Os03g46740.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAG GTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACCEST: gi|58691671|gb|CK080358.1|CK080358
genomic: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctg ... tccattacagGTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACC
EST: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAG GTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACCEST: gi|226698432|gb|GO497010.1|GO497010
genomic: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctg ... tccattacagGTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACC
EST: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAG GTTATTTTGTACEST: gi|58593744|gb|CF992052.1|CF992052
genomic: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctg ... tccattacagGTTATTTTGTAC
EST: TAGCTCGTTCAATAATGTGCGATGATACAAAGGAAACAATAGAGCCAGAG GTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACCEST: gi|27547660|gb|CA767399.2|CA767399
genomic: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctg ... tccattacagGTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACC
EST: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAG GTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACC
genomic: TAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctg ... tccattacagGTTATTTTGTACGATGAGCCTACTGCTGGACTTGACCCTATTGCATCCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCGAATGCCATCTGAATTGTCTGGTGGCATGAAAAAGCGTGTAGCTCTAGCTCGTTCAATAATATACGATGATACAAAGGAAACAATAGAGCCAGAGgtataccctgactaatctcttcagtcattacgagtaaattgctgtaatagttcacaggaaaaggagatcaaacagcttaacttactattgactgtcttcttgatattatacattttttccattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA