Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttatacagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcatacatggcatttacctccatcaactagtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G027857_T01 (Zea mays), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatccttt-atacagtgacattatttttgctac--agtttatttgctggtcattctcttgagaagtaattca--tacatggcatttacctccatcaactagtta-----------------------------------------------------------------
|| ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||| || || ||| |||||||| ||||||||| | | || | | | | | | | || ||| | || | | ||| || | | |||| || || | | ||
GTTGAGTGGGATGAGATAAATGTTGCGTGGGGTCAGGCTGCACTTCTGTTGCATACCATGGCCCATTATTTCACTCCAAAATTCCGgtatccttttgttttctcgcagcagctatagtgctcattctaagtgcatggtgttacttacaattctaactctattgaagtgcataaactgtgataattttaatagtaagcacaaaagaatttttttcttagaagaaatgttgcaatgcatttcttgaacattttcctag
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G092112_T01 (Zea mays), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatccttta----------tacagtgacattatttttgctacagtttat-ttgctggtcattctcttgagaagt---aattcatacatggcatttacctccatcaactagtta-------------------------------------
|| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||| ||||||||| |||||||||| | ||| | | || | ||| ||| || ||||| | | | || | | | | | || || | | | | | || | |
GTTGAGTGGGATGAGATAAATGCTGCATGGGGTCAGGCTGCACTGCTGTTGCATACCATGGCTCAGTATTTCACCCCAAAATTCCAgtatccttttgttttctctctgcagctataacgttcattcta-agtgcatattgctacttacaattttaaattattgaagtgcctaaattgtaaattttaagaattattattaaaagaaatgttgcaatgagttcctgaaaattttcctag
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttata-cagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcatacatggcatttacctccatcaactagtta-----
|| || |||||||||||||||||||| |||||||| ||| || || | || || ||| ||||| ||| || || ||| |||||||||| | | ||| | | | | || | | |||| | || | || || || | | | ||||| | |||
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttgtctccgtg----tgtataggatata-tacatttagttactatagtag-gaaaaatagtcaagattgttaatttagtataacttctcttttatgtct
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttataca---gtgacattatttttgctacagtttatttgctggtcattctcttgaga--agtaattcatacatggcatttacctccatcaactagtta
|| || |||||||||||||||||||| |||||||| ||| || || | ||||| ||| || || ||| || || ||| |||||||||| | ||| ||| | | | | || | || | | |||| || | | | ||||||
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttgtctccatgtgtgtgtatatatatgagaagagatcaaatttacaccggtataactttgacaattattataccattctataatttttcaact-----
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT3G61710.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttatacagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcatacatggcatttacctccatcaactagtta--------
|| |||||||||||||| ||||||||||||||||| || |||||| | ||||| ||| | | || ||| ||||| ||| ||||||||| || | || | || |||||| | || | | || || ||| |||| | | | ||
GTTGAGTGGGATGAGATCAATGCTGCTTGGGGCCAAGCCTGTCTTCTCCTCCATACGATGTGTAACTATTTCCGGCCAAAGTTTCAgtatccttataactatctcacagtccttttc----cttattttaccctttttgtttgattctgttgactgtatatgaagtttatccttgaccagtaaccccttttaag
upper sequence: LOC_Os03g44200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttatacagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcataca-tggcatttacctccatcaactagtta
|| || |||||||||||||||||||| |||||||| ||| ||||| | ||||| |||| ||| || ||| ||||| || |||||||||| || | ||| | | | | || | ||| | | | | | | || || | || || | | || |||| | | ||
GTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTTCTTCTCCATACAATGGTTCAATATTTCCGACCAAAGTTCCAgtatcctttgtagtgaaacaacacatgtttgaatgtatgttttcaattaaatatttgtgaaaatagtcaattcagttctaaatagaagaatcatccaatt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33807311|gb|CF329536.1|CF329536EST: GCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGA ATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACAT
genomic: GCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatccttta ... atttatctagATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGTTACAGACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAGTGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTACTTCTTCCCAAAATTTGAgtatcctttatacagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcatacatggcatttacctccatcaactagtta
- - - - - - - - - - - - - - - - - - GCTGCT