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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaatattactacttgtcacacattataatttgcattttttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttggctcataatttatttctgcaaaacgtatcacag

Basic information

species Oryza sativa
transcript LOC_Os03g38590.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g38590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G124918_T01 (Zea mays), 5'ss of exon 8
GTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaata---ttactacttgtcacacattataatttgcattttttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttg-gctcataatttatttctgcaaaacgtatcacag
|||| || || |||||||| ||  |||| || ||||||||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||||| ||||   | | |  ||  | | |  |  |  || || || ||       |  || ||||| |   |      ||| |    ||||     | | || | | | |                          
GTCCTAAAATATGGTTTCTCGCAATCATATACTTCATTCTTGGATGCCCCGGCGCCTACTACCTTTGGTACCGGCCACTATACCGTGCCATGAGgtaaatgcaatagattaaatcgtttcctccctatgaatattacagttattatatctctacttggtgagctccccgtaaaattattatccactataccgtgcatgtgtttacag-------------------------

upper sequence: LOC_Os03g38590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G011078_T01 (Zea mays), 5'ss of exon 8
GTCCCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaatattact-acttgtca----cacattataatttgcattt---tttgggatcattttttgtgaggttttctgttgtttagttcgaactaatatctccttggctcataatttatttctgcaaaacgtatcacag
|||| ||||| |||||||| ||  |||| || ||||| || |||||||| ||||| ||||| || |||||||| ||||| ||||| || ||||||||||||  ||  |||  ||  |||     | |  || || |  |||||   | |   || | ||| |||  |     |   |||  ||                                                     
GTCCTAAGATATGGTTTCTCGCAATCATATACTTCATCCTCGGATGCCCCGGTGCATACTACCTTTGGTACCGGCCACTATACCGCGCAATGAGgtaaatgcgatgatacccacaagtcgtttcctccctacaaataacatttcactctcatataagtttctgtctgcaacacatgtgtgcag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25799630|gb|CA755591.1|CA755591
EST:     TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAG                         GAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
genomic: TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaa ... cgtatcacagGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
EST: gi|29662682|gb|CB658957.1|CB658957
EST:     TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAG                         GAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
genomic: TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaa ... cgtatcacagGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
EST: gi|29662718|gb|CB658993.1|CB658993
EST:     TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAG                         GAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG
genomic: TGCCCAGGTGCCTACTATCTGTGGTACCGACCACTTTACCGTGCCATGAGgtaaatgaaa ... cgtatcacagGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTG