1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGCTTTCAGAGGTTTTGGTGGTCCACAAGCTATGCTGATTGCAGAGAATTGGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataaccagtttttgcggtggtcctgttctgcttatactattgtggggttaattcattgattgttttcag
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAA GAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTTEST: gi|86903777|gb|CI302423.1|CI302423
genomic: AGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataa ... ttgttttcagGAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
EST: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATNAAA GAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTTEST: gi|88411025|gb|CI606244.1|CI606244
genomic: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataa ... ttgttttcagGAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
EST: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAA GAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTTEST: gi|58683895|gb|CK072582.1|CK072582
genomic: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataa ... ttgttttcagGAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
EST: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAA GAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
genomic: GGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataa ... ttgttttcagGAACTTAATTTTCAAAGTGAGGGATCTGTGCTTCATTATGGCCAGTTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTTCAGAGGTTTTGGTGGTCCACAAGCTATGCTGATTGCAGAGAATTGGATTCAGCACATGGCTACAGAACTCAAGCGAAGTCCTGAGGAGATAAAAgtaagtataaccagtttttgcggtggtcctgttctgcttatactattgtggggttaattcattgattgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT